Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    33   0.22 
07_01_0600 - 4462337-4462774                                           29   3.6  
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137...    29   3.6  
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    28   6.4  
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289...    28   6.4  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -3

Query: 571 HSLASIIFLNSYQHYHNMYPCICR*MALMRPSHFALALLLSLEVIDRSDAAEQRFRRHLL 392
           HSL+ I+ L+  +  +  + C      L +P HF L L+LS +++    +   + RR+ L
Sbjct: 569 HSLSKIMILHLKRFSYGSHGCT----KLFKPIHFPLELVLSRDLLSSPSSEHMQSRRYEL 624

Query: 391 IISI 380
           + +I
Sbjct: 625 VATI 628


>07_01_0600 - 4462337-4462774
          Length = 145

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
 Frame = +3

Query: 276 TQLPPRGTQITTP-CTTAPPHXXXXXXXXXXQVSPPMEIISKCRRKRCSAASLRSMTSSD 452
           + +PPR   +    C +AP H           V PP         +RCSA+S  S   + 
Sbjct: 35  SSMPPRSRAVDAAYCYSAPVHLRLPVRHTIIVVRPPHPSTVPTPARRCSASSSSSHCITP 94

Query: 453 RRRASAKC 476
            R    +C
Sbjct: 95  HRLFLGRC 102


>06_01_0175 -
           1371089-1371706,1371812-1371994,1372069-1372324,
           1372407-1372976,1373423-1373529,1373664-1374136,
           1374279-1374372
          Length = 766

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 296 PSWWQLCTLSCNFGT---CCIFYSE 231
           P WW +C L  N GT    C +Y+E
Sbjct: 444 PEWWFICILIANIGTTIFACEYYNE 468


>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -3

Query: 388 ISIGGDTWRRVPPRPVPLCGGAVVQGVVICVPRGGSCVRCLAILGHAVSFTPNLNCKQSD 209
           +++G  + RR+PP   PL  G  V+        G + +  +A  G+A +F   L C +  
Sbjct: 146 VAVGHQSTRRLPPPDAPLLEGITVE--------GDTALHVVATHGNAANF---LECAEII 194

Query: 208 CTKQKIKLQNTGRK 167
           C + +  L  T  K
Sbjct: 195 CNRARRLLLATNDK 208


>07_03_1268 +
           25328448-25328506,25328589-25328768,25328872-25328974,
           25329095-25329119,25329587-25329614,25330603-25330755,
           25331339-25333421,25333666-25334983,25335256-25335339,
           25335756-25335769
          Length = 1348

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 484 ALTPSSGRYMDTYCDNADMNLKK*WKLRND 573
           +L  S G++ D Y    D  LK+ WKL+ +
Sbjct: 793 SLEESRGKFYDQYMQKRDAKLKEDWKLQGE 822


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,440
Number of Sequences: 37544
Number of extensions: 448051
Number of successful extensions: 1279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)