Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               29   4.9  
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   6.5  

>SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -3

Query: 283 SCVRCLAILGHAVSFTPNLNCKQSDCTKQKIKLQNTGRKYAGAKIARKSDS*RVVKKRAN 104
           +CVRC+ +L   V F+ NL+   S   + +   + T +K    ++ + S++  +V ++  
Sbjct: 26  NCVRCVLLLAKGVPFSANLSQGFSTIAQSETFFRETFKKVVTLELLKPSETALIVFEKTE 85

Query: 103 WIPIVF---FFKYC 71
              + +   FF  C
Sbjct: 86  ESAVDYVTPFFAVC 99


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 362 ACTPSPRTPVWWCRGTGCCYLRPSWWQLCTLSCNFGTC 249
           AC P+ R  +  C G GC    P     C  +C  G C
Sbjct: 122 ACPPNARKCLQTCNGGGCHMTCPRGVGYCHQTCAHGRC 159


>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1266

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 415  QRFRRHLLIISIGGDTWRRVPPRPVPLCGGAVVQGVVICVPRGGSCV 275
            +R   +  ++S  G   R +PP   P CG   +QGV +    GG+ V
Sbjct: 995  ERIITYTKLLSEPGYHRRTLPPEDWPYCGALSIQGVSLEYLEGGTRV 1041


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,392,224
Number of Sequences: 59808
Number of extensions: 504236
Number of successful extensions: 1563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)