Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed...    36   0.072
X57480-1|CAA40718.1|  392|Drosophila melanogaster odd protein.         29   6.2  
BT029095-1|ABJ17028.1|  554|Drosophila melanogaster IP13321p pro...    29   6.2  
BT015214-1|AAT94443.1|  392|Drosophila melanogaster RE48009p pro...    29   6.2  
AE014298-745|AAF46035.1|  554|Drosophila melanogaster CG15784-PA...    29   6.2  
AE014134-635|AAF51085.1|  392|Drosophila melanogaster CG3851-PA ...    29   6.2  
BT023940-1|ABB36444.1|  592|Drosophila melanogaster LP20233p pro...    29   8.2  
AF121361-3|AAD37505.1|  277|Drosophila melanogaster zinc finger ...    29   8.2  
AF121360-1|AAD34351.1|  277|Drosophila melanogaster DNZDHHC/NEW1...    29   8.2  
AE014297-2291|AAF55377.2|  594|Drosophila melanogaster CG5225-PA...    29   8.2  

>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1065

 Score = 35.5 bits (78), Expect = 0.072
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -2

Query: 692 NINSIFFCFKSKVRTHMYIKCLNFILHINRYVLELLCRPRSFLSFHYFFKFISALSQYVS 513
           N+ +  +  K+K++ H YI+  N  +H    + E LC  RS + FH    F++  + Y+ 
Sbjct: 668 NVETKRYFHKTKIKIH-YIEMTN--VHAKELIKEYLCTKRSVIFFHNEIDFLTFQNAYIE 724

Query: 512 MYLP 501
           +  P
Sbjct: 725 IVSP 728


>X57480-1|CAA40718.1|  392|Drosophila melanogaster odd protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 202 LCNHFVYN*GSE*KIQHVPKLQDNVHSCHHEGRK*QHPVPRHHHTGVRGEGVHA 363
           L NH++ N       Q   + Q + H  HH G    HP P  HH      G+H+
Sbjct: 130 LMNHWIRNAAI---YQQQQQQQQHPHHHHHHGHP-HHPHPHPHHVRPYPAGLHS 179


>BT029095-1|ABJ17028.1|  554|Drosophila melanogaster IP13321p
           protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 277 HSCHHEGRK*QHPVPRHHHTGVRGEGVH 360
           H  HH GR   H  P HHH      G H
Sbjct: 204 HGPHHHGRHGHHGRPHHHHPHGHHFGPH 231


>BT015214-1|AAT94443.1|  392|Drosophila melanogaster RE48009p
           protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 202 LCNHFVYN*GSE*KIQHVPKLQDNVHSCHHEGRK*QHPVPRHHHTGVRGEGVHA 363
           L NH++ N       Q   + Q + H  HH G    HP P  HH      G+H+
Sbjct: 130 LMNHWIRNAAI---YQQQQQQQQHPHHHHHHGHP-HHPHPHPHHVRPYPAGLHS 179


>AE014298-745|AAF46035.1|  554|Drosophila melanogaster CG15784-PA
           protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 277 HSCHHEGRK*QHPVPRHHHTGVRGEGVH 360
           H  HH GR   H  P HHH      G H
Sbjct: 204 HGPHHHGRHGHHGRPHHHHPHGHHFGPH 231


>AE014134-635|AAF51085.1|  392|Drosophila melanogaster CG3851-PA
           protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 202 LCNHFVYN*GSE*KIQHVPKLQDNVHSCHHEGRK*QHPVPRHHHTGVRGEGVHA 363
           L NH++ N       Q   + Q + H  HH G    HP P  HH      G+H+
Sbjct: 130 LMNHWIRNAAI---YQQQQQQQQHPHHHHHHGHP-HHPHPHPHHVRPYPAGLHS 179


>BT023940-1|ABB36444.1|  592|Drosophila melanogaster LP20233p
           protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 277 HSCHHEGRK*QHPVPRHHHTGVRGEGVHAAKCHLQ 381
           H  H+ G   Q P   H HTG  G G H+   H Q
Sbjct: 396 HPSHNHGG--QDPHNTHPHTGTHGNGGHSQTSHHQ 428


>AF121361-3|AAD37505.1|  277|Drosophila melanogaster zinc finger
           protein protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 323 RGTGCCYLRPSWWQLCTLSC 264
           R    C LRPSWW  C   C
Sbjct: 198 RRCSACSLRPSWWTSCMRFC 217


>AF121360-1|AAD34351.1|  277|Drosophila melanogaster DNZDHHC/NEW1
           zinc finger protein11 protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 323 RGTGCCYLRPSWWQLCTLSC 264
           R    C LRPSWW  C   C
Sbjct: 198 RRCSACSLRPSWWTSCMRFC 217


>AE014297-2291|AAF55377.2|  594|Drosophila melanogaster CG5225-PA
           protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 277 HSCHHEGRK*QHPVPRHHHTGVRGEGVHAAKCHLQ 381
           H  H+ G   Q P   H HTG  G G H+   H Q
Sbjct: 398 HPSHNHGG--QDPHNTHPHTGTHGNGGHSQTSHHQ 430


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,505,420
Number of Sequences: 53049
Number of extensions: 755633
Number of successful extensions: 2525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2509
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)