Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53335-8|AAA96173.1|  606|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    29   4.3  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF016420-9|AAB65304.1|  410|Caenorhabditis elegans Serpentine re...    29   4.3  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    29   4.3  
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    29   4.3  
Z66514-3|CAA91343.1|  854|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AY342006-1|AAQ22724.1|  854|Caenorhabditis elegans TRP-3 channel...    28   5.7  
AJ276029-1|CAC81656.1|  854|Caenorhabditis elegans TRP homologou...    28   5.7  
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    28   5.7  
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    28   5.7  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    28   7.6  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    28   7.6  

>U53335-8|AAA96173.1|  606|Caenorhabditis elegans Hypothetical
           protein C55C3.1 protein.
          Length = 606

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 50  TDALKLFAIFKKKNYRYPIRAFFDNTLAVRFPRDFR 157
           T+ALK+ ++   +  R  I + FD++LA +F  DFR
Sbjct: 248 TNALKMISVGGDEKSRIDISSIFDSSLASKFFIDFR 283


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 62  KLFAIFKKKNYRYPIRAFFD-NTLAVRFPRDFR 157
           K  A + K N  YP+++F D +T A  FPR  R
Sbjct: 575 KALAFYLKNNNPYPVKSFIDGDTDAFDFPRRLR 607


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 317 YHGTTTQGYGARGYTPPSVTSNGNYKQVSS 406
           Y  T+T GY ++ Y P S +S+  Y+  S+
Sbjct: 89  YSPTSTYGYSSQNYNPSSASSSNVYRNPST 118


>AF016420-9|AAB65304.1|  410|Caenorhabditis elegans Serpentine
           receptor, class r protein6 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 144 RAIFAPAYFRPVF*SFIFCFVQSLCLQLRFGVKDTACPKIARQRTQL 284
           + + AP Y   VF + + CF+ ++CL   F V  +   +I    T+L
Sbjct: 186 KTVIAPLYIAMVFINLLSCFIVAICLIYYFLVNLSLSREIRYFNTEL 232


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 62  KLFAIFKKKNYRYPIRAFFD-NTLAVRFPRDFR 157
           K  A + K N  YP+++F D +T A  FPR  R
Sbjct: 575 KALAFYLKNNNPYPVKSFIDGDTDAFDFPRRLR 607


>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 117 LTTR*LSDFRAIFAPAYFRPVF*SF--IFCFVQS 212
           LTTR   DFRA   PA   P F  F    CFV++
Sbjct: 588 LTTRGRRDFRACLKPARLTPAFRLFSTFLCFVEA 621


>Z66514-3|CAA91343.1|  854|Caenorhabditis elegans Hypothetical
           protein K01A11.4 protein.
          Length = 854

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -3

Query: 310 VVICVPRGGSCVRCLAILGHAVSFTPNLNCKQSDCTKQKIKLQNTGR 170
           ++ C+    S V+CL   GH +     + C+   C ++ +   ++ R
Sbjct: 148 MLACILNNFSIVQCLITRGHCIQIPHFITCECKTCKRETVTTHSSTR 194


>AY342006-1|AAQ22724.1|  854|Caenorhabditis elegans TRP-3 channel
           protein protein.
          Length = 854

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -3

Query: 310 VVICVPRGGSCVRCLAILGHAVSFTPNLNCKQSDCTKQKIKLQNTGR 170
           ++ C+    S V+CL   GH +     + C+   C ++ +   ++ R
Sbjct: 148 MLACILNNFSIVQCLITRGHCIQIPHFITCECKTCKRETVTTHSSTR 194


>AJ276029-1|CAC81656.1|  854|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 854

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -3

Query: 310 VVICVPRGGSCVRCLAILGHAVSFTPNLNCKQSDCTKQKIKLQNTGR 170
           ++ C+    S V+CL   GH +     + C+   C ++ +   ++ R
Sbjct: 148 MLACILNNFSIVQCLITRGHCIQIPHFITCECKTCKRETVTTHSSTR 194


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 213 LCLQLRFGVKDTACPKIARQRTQLPPRGTQITTPCTTAPPHXXXXXXXXXXQVSPPM 383
           LC+Q++        P  A   T +PP+     TP  T+P             +SPP+
Sbjct: 46  LCMQMQM---QQMVPGTATNSTYMPPQSKNTVTPNATSPLSQISDRDSGNDTISPPL 99


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 213 LCLQLRFGVKDTACPKIARQRTQLPPRGTQITTPCTTAPPHXXXXXXXXXXQVSPPM 383
           LC+Q++        P  A   T +PP+     TP  T+P             +SPP+
Sbjct: 42  LCMQMQM---QQMVPGTATNSTYMPPQSKNTVTPNATSPLSQISDRDSGNDTISPPL 95


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +3

Query: 255 PKIARQRTQLPPRGTQITTPCTTAPPHXXXXXXXXXXQVSPPMEIISKCRRKRCSAASLR 434
           PK A+ R++ PP   + +   + +PP           +   P   I   RR+R  +AS +
Sbjct: 361 PKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSAS-K 419

Query: 435 SMTSSDRRRASAK 473
           S  +  R ++ +K
Sbjct: 420 SPPAPKRAKSRSK 432


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
            protein C09E7.8b protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 332  TQGYGARGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQEKGEREM 475
            TQ YG+   T PS +S GN +  S  A+ G   +   L +     R++
Sbjct: 958  TQSYGSSISTMPSTSSRGNVQHHSGSAVRGQSITPTGLSQVPMSPRKL 1005


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
            protein C09E7.8a protein.
          Length = 1114

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 332  TQGYGARGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQEKGEREM 475
            TQ YG+   T PS +S GN +  S  A+ G   +   L +     R++
Sbjct: 992  TQSYGSSISTMPSTSSRGNVQHHSGSAVRGQSITPTGLSQVPMSPRKL 1039


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,186
Number of Sequences: 27780
Number of extensions: 384648
Number of successful extensions: 1007
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)