Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.93 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 294 GTQITTPCTTAPP 332
           G Q  TPCT +PP
Sbjct: 387 GAQFATPCTPSPP 399


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 253 VPKLQDNVHSCHHEG 297
           + ++ ++VH CHH G
Sbjct: 15  IQQILESVHHCHHNG 29


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -2

Query: 383 HWR*HLAACTPSPR-TP 336
           HW+    AC+P PR TP
Sbjct: 384 HWQMSCVACSPPPRQTP 400


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 160 RRIFGQCFEVLFFVLCNHFVY 222
           ++ FG+ F    F+L N+F++
Sbjct: 4   QKYFGKNFPSTSFILINYFIF 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,635
Number of Sequences: 438
Number of extensions: 5115
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)