Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0505
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29390.3 68415.m03570 sterol 4-alpha-methyl-oxidase 1 (SMO1) ... 31 0.57
At2g29390.2 68415.m03572 sterol 4-alpha-methyl-oxidase 1 (SMO1) ... 31 0.57
At2g29390.1 68415.m03571 sterol 4-alpha-methyl-oxidase 1 (SMO1) ... 31 0.57
At1g07420.2 68414.m00792 sterol 4-alpha-methyl-oxidase 2 (SMO2) ... 31 1.00
At1g07420.1 68414.m00791 sterol 4-alpha-methyl-oxidase 2 (SMO2) ... 31 1.00
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 3.0
At1g13570.1 68414.m01591 F-box family protein contains F-box dom... 29 4.0
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 28 5.3
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 28 7.0
At4g23320.1 68417.m03360 protein kinase family protein contains ... 27 9.3
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 27 9.3
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 27 9.3
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ... 27 9.3
At2g48060.1 68415.m06015 hypothetical protein 27 9.3
>At2g29390.3 68415.m03570 sterol 4-alpha-methyl-oxidase 1 (SMO1)
nearly identical to sterol 4-alpha-methyl-oxidase
GI:16973469 from [Arabidopsis thaliana]; identical to
cDNA sterol 4-alpha-methyl-oxidase (SMO) partial cds,
GI:16973431
Length = 253
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 184 EVLFFVLCNHFVYN*GSE*KIQHVPKLQDNVHSCHHE 294
++LF+ + FV+ G +I H L NVHS HHE
Sbjct: 104 QILFYFIIEDFVFYWGH--RILHTKWLYKNVHSVHHE 138
>At2g29390.2 68415.m03572 sterol 4-alpha-methyl-oxidase 1 (SMO1)
nearly identical to sterol 4-alpha-methyl-oxidase
GI:16973469 from [Arabidopsis thaliana]; identical to
cDNA sterol 4-alpha-methyl-oxidase (SMO) partial cds,
GI:16973431
Length = 260
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 184 EVLFFVLCNHFVYN*GSE*KIQHVPKLQDNVHSCHHE 294
++LF+ + FV+ G +I H L NVHS HHE
Sbjct: 111 QILFYFIIEDFVFYWGH--RILHTKWLYKNVHSVHHE 145
>At2g29390.1 68415.m03571 sterol 4-alpha-methyl-oxidase 1 (SMO1)
nearly identical to sterol 4-alpha-methyl-oxidase
GI:16973469 from [Arabidopsis thaliana]; identical to
cDNA sterol 4-alpha-methyl-oxidase (SMO) partial cds,
GI:16973431
Length = 272
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 184 EVLFFVLCNHFVYN*GSE*KIQHVPKLQDNVHSCHHE 294
++LF+ + FV+ G +I H L NVHS HHE
Sbjct: 111 QILFYFIIEDFVFYWGH--RILHTKWLYKNVHSVHHE 145
>At1g07420.2 68414.m00792 sterol 4-alpha-methyl-oxidase 2 (SMO2)
identical to sterol 4-alpha-methyl-oxidase GI:16973471
from [Arabidopsis thaliana]; identical to cDNA sterol
4-alpha-methyl-oxidase GI:16973470
Length = 228
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 184 EVLFFVLCNHFVYN*GSE*KIQHVPKLQDNVHSCHHE 294
++LF+ + FV+ G +I H L NVHS HHE
Sbjct: 73 QILFYFIIEDFVFYWGH--RILHSKWLYKNVHSVHHE 107
>At1g07420.1 68414.m00791 sterol 4-alpha-methyl-oxidase 2 (SMO2)
identical to sterol 4-alpha-methyl-oxidase GI:16973471
from [Arabidopsis thaliana]; identical to cDNA sterol
4-alpha-methyl-oxidase GI:16973470
Length = 266
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 184 EVLFFVLCNHFVYN*GSE*KIQHVPKLQDNVHSCHHE 294
++LF+ + FV+ G +I H L NVHS HHE
Sbjct: 111 QILFYFIIEDFVFYWGH--RILHSKWLYKNVHSVHHE 145
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 317 YHGTTTQGYGARGYTPPSVTSNGNY 391
Y+G QGY A GY PP N Y
Sbjct: 369 YYGYPPQGYEAYGYAPPPQDPNAYY 393
>At1g13570.1 68414.m01591 F-box family protein contains F-box domain
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 416
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 641 YIKCLNF--ILHINRYVLELL--CRPRSFLSFHYFFKFISALSQYVSMYLPLDGVNASVA 474
Y+K LN IL + L+ C FLS YF + ++S MYL LDG +
Sbjct: 156 YLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIF 215
Query: 473 FRARPSPVA 447
P VA
Sbjct: 216 LENTPKLVA 224
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 442 PQATGEGRARNATDALTPSSGRYMDTYCDNADMNLKK*WKLRN 570
P GEG+ N +A+ + G + T N D +++ +K+RN
Sbjct: 1231 PPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRN 1273
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 442 PQATGEGRARNATDALTPSSGRYMDTYCDNADMNLKK*WKLRN 570
P GEG+ N A+ + G + T N D L++ +K+RN
Sbjct: 1341 PPNIGEGKPENQNHAIVFTRGEALQTIDMNQDHYLEEAFKMRN 1383
>At4g23320.1 68417.m03360 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 416
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 326 TTTQGYGARGYTPPSVTSNGNYKQVSSKALFG 421
TT + G GY PP +NG + S FG
Sbjct: 310 TTARVVGTIGYMPPEYVTNGQFSTKSDVYSFG 341
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 434 SKRRCRTALSTTLAYNFHWR*HLAACTPSPRTPVWWCRGTG 312
S R RTAL+ H R + AC P T WW R G
Sbjct: 646 SSRVSRTALAPLPNNTSHGR-NTPACAVVPETQQWWYRPCG 685
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 434 SKRRCRTALSTTLAYNFHWR*HLAACTPSPRTPVWWCRGTG 312
S R RTAL+ H R + AC P T WW R G
Sbjct: 619 SSRVSRTALAPLPNNTSHGR-NTPACAVVPETQQWWYRPCG 658
>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1934
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 442 PQATGEGRARNATDALTPSSGRYMDTYCDNADMNLKK*WKLRNDL 576
P GEG+ N A+ + G + T N D ++ +KLRN L
Sbjct: 1296 PAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKLRNVL 1340
>At2g48060.1 68415.m06015 hypothetical protein
Length = 621
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 556 IIFLNSYQHYHNMYPCICR*MALMRPSHFALALLLSLEVIDRSDAAEQRFRRHLL 392
+IF Y HN+ I + + L+ HFAL +L ++++ S E R +L
Sbjct: 513 VIFFLMYLLSHNINRKIRKSLILLCEVHFALLYILEIDLVSNSLKQEGSASREVL 567
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,170
Number of Sequences: 28952
Number of extensions: 341108
Number of successful extensions: 853
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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