Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0504
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.51 
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    27   2.7  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.2  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   8.3  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   8.3  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 435 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLISEVRN 304
           HNP   L  L +SRE  SL     D   + R TL  +S+L+S  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 348 FTLSMVSSLISEVRNGFGFAVSVRVTVASSHSNNNVRLVVVVESLL-QLT 202
           F+   ++ L   + +G  +AVS++  + +S   N+ +L  ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 196 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 306
           ETG   E  D++    V+V  +   +    DGKP  I
Sbjct: 85  ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 208 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 330
           LKE  ++DN P     ++ ++ Y N +G  E ++ F    G
Sbjct: 76  LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +1

Query: 151 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 306
           A   N    + ++      +++++D   +PHV+VA  G  +        ETI
Sbjct: 97  ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,742
Number of Sequences: 5004
Number of extensions: 40689
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)