Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0504
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 30 1.6
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 30 1.6
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 29 2.8
09_02_0454 + 9514706-9515776 28 6.4
07_03_1609 + 28128275-28128380,28128941-28129128,28129238-281294... 27 8.5
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 27 8.5
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 27 8.5
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 438 PHNPVLRLHYLNLSRE-FRSLARGGGDLRNRFTLSMVSSLISEVRNGFGFAVSVRVTVAS 262
PH +++S + F SL G+ ++ L +L+S++++GFG + VTV S
Sbjct: 117 PHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMS 176
Query: 261 SHSNNNV 241
+ +
Sbjct: 177 AMGEEQI 183
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -3
Query: 336 MVSSLISEVRNGFGFAVSVR---VTVASSHSNNNVRLVVV--VESLLQLTSFATYDAVGS 172
+V+ L E+ + FGF V + A SH N NVR + + L D + +
Sbjct: 1072 VVAELAEELWDRFGFDVFTDYSGIFDALSHKNYNVRAAAAEALAAALDENLDKMQDTLST 1131
Query: 171 LEIVVVSSIGAGVEF 127
L + + +GAGVEF
Sbjct: 1132 LFSLYIRDLGAGVEF 1146
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 438 PHNPVLRLHYLNLSRE-FRSLARGGGDLRNRFTLSMVSSLISEVRNGFGFAVSVRVTVAS 262
PH +++S + F SL G+ ++ L SL+ +++ GFG + VTV S
Sbjct: 102 PHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMS 161
Query: 261 SHSNNNV 241
+ +
Sbjct: 162 AMGEEQI 168
>09_02_0454 + 9514706-9515776
Length = 356
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 186 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 85
D VGS +V V V D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220
>07_03_1609 +
28128275-28128380,28128941-28129128,28129238-28129415,
28130753-28130973
Length = 230
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 349 IHPEHGIQSHQRST*WFRVCRQ 284
+HP+H ++SH + + R CRQ
Sbjct: 31 LHPQHVLRSHAQEVNFVRYCRQ 52
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -3
Query: 333 VSSLISEVRNGFGFAVSVRVTVASSHSNNNVRLVVVVESLLQLTSFATYDAVGSLEIVVV 154
V L R G G S + VA + N VRL+ V + Y GSL+IV+
Sbjct: 408 VKRLCQSSRQGIGELKSELILVAKLYHKNLVRLIGVCLEQQEKILVYEYMPNGSLDIVLF 467
Query: 153 SS 148
+S
Sbjct: 468 AS 469
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 390 FRSLARGGGDLRNRFTLSMVSSLISEVRNGFGFAVSVRVTVASS 259
F SL G+ ++ L +L+ +++ GFG V VTV S+
Sbjct: 63 FVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMSA 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,273
Number of Sequences: 37544
Number of extensions: 299061
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -