Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0504
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0) 30 1.2
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 30 1.6
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 28 5.0
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 28 6.6
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12) 27 8.7
SB_16713| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_9160| Best HMM Match : EGF (HMM E-Value=0.0019) 27 8.7
>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
Length = 488
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 124 SEFDASPDGAYNYNFETSNGIVRSETGE 207
+E DA PDG+YN++ ++ +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 213 GGSRRRQQASRYCCCAR 263
GGSRRR S++CC AR
Sbjct: 97 GGSRRRNSKSKFCCFAR 113
>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 91 PPTEDYPKIVRSEFDASPDGAY 156
PPT+DY + RS+ D S DG Y
Sbjct: 17 PPTKDYDRRSRSQDDDSDDGCY 38
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 139 SPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVR-GSYSYTNTDGKPETITYF 315
SP G Y E + I R E +L +K H ++AVR G Y + D T+T+
Sbjct: 94 SPSGHYYKVCEPNFFIGRDENLDLTLKSRSVDKKHAVIAVRDGRYELYDMDSLNGTVTHS 153
Query: 316 A 318
A
Sbjct: 154 A 154
>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 129 IRRQPRWSLQLQFRDFQRHRT*RNW*AEGGSRRRQ 233
+RR+ WS+Q++ + RH + W GG ++R+
Sbjct: 3 VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37
>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 127 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 255
E D+ YNY+ NG+ S+ G+L DN HV+ A
Sbjct: 65 EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 175 SNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADET 327
S + + TG K LDD KPHV+ ++ SY D E + ET
Sbjct: 204 SKTVTKMFTGFRKLTLDDLRKPHVVKDIQ-SYILNRLDDDSELRKHLTRET 253
>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +1
Query: 139 SPDGAYNYNFETSNGIVRS----ETGELKEALDDDNKPHVIVAVRGSYSY 276
SPDG + NFE NG + + + +A++ D++ V+V ++G Y++
Sbjct: 205 SPDGICSVNFEFYNGAMSTAQCRRLSSVLQAVERDDRVKVVV-LKGGYNF 253
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 551 FVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRH 435
F ++L ++++ N+Q++ VS +L S K M +L H
Sbjct: 811 FQDELLMLDELIQGNIQRSQLVSEQLSDSRKTMVKVLEH 849
>SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)
Length = 185
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 548 VHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 423
VH I Q++++ N +KN + + + WW LR+ + Y
Sbjct: 139 VHTIF--QRLLRPNQRKNSPKKLFSACHSTKRWWRLRNVLAY 178
>SB_16713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 315 EVRNGFGFAVSVRVTVASSHSNNN 244
E+ GF A S +T+ +SHSNNN
Sbjct: 146 EINGGFS-ATSTDLTIEASHSNNN 168
>SB_9160| Best HMM Match : EGF (HMM E-Value=0.0019)
Length = 497
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 3 GYQQERTKTIKNE--IDHRCSSRPCGYRHRCPPYRGLP 110
GY + T+ +N + CSS PCG C P GLP
Sbjct: 102 GYTYKGTEINRNRDTFQNGCSSNPCGNNEICMP-GGLP 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,899
Number of Sequences: 59808
Number of extensions: 339308
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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