Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0504
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9    QQERTKTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRH 185
            Q ER K +KN++ +R SSR  G  H+ P + R LP D     R+  R + Q +F+  +  
Sbjct: 2525 QLER-KFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSK 2582

Query: 186  R 188
            R
Sbjct: 2583 R 2583


>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 256 VRGSYSYTNTDGKPETITYF 315
           ++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 390 FRSLARGGGDLRNRFTLSMVSSLISEVRNGFGFAVSVRVTVASS 259
           F SL R    L+   TLS  +S +  VRN  G+++     +A++
Sbjct: 449 FISLVRSSRKLKRSNTLSSSASSVKRVRNRLGWSIIAVCLIAAA 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,385
Number of Sequences: 27780
Number of extensions: 241945
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)