Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0504
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66740.1 68418.m08413 hypothetical protein contains Pfam prof... 30 1.0
At5g05840.1 68418.m00642 expressed protein contains Pfam profile... 28 4.1
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At5g09910.1 68418.m01146 GTP-binding protein-related contains we... 27 7.1
At4g24290.2 68417.m03488 expressed protein 27 7.1
At4g24290.1 68417.m03487 expressed protein 27 7.1
At1g66220.1 68414.m07516 subtilase family protein contains simil... 27 7.1
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 27 7.1
At1g18990.1 68414.m02362 expressed protein contains Pfam profile... 27 7.1
At4g10530.1 68417.m01725 subtilase family protein contains simil... 27 9.4
At4g10520.1 68417.m01724 subtilase family protein contains simil... 27 9.4
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ... 27 9.4
>At5g66740.1 68418.m08413 hypothetical protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 247
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 275 TRTLTANPKPLRTSLMRLDTMLRVNLFLRSPPPRAKLLNSLDRF 406
T T P+PLR L LD NLFL + K++N D F
Sbjct: 72 TPASTGTPRPLRRFLQGLDPRSTANLFLDATCIGEKIINGEDCF 115
>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620);
expression supported by MPSS
Length = 439
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 296 PKPLRTSLMRLDTMLRVNLFLRSPPPRAKLLNSLDRF 406
P+PLR L LD NLF RS K +N D F
Sbjct: 221 PRPLRRFLQGLDPKSTANLFARSVCMGEKKINDEDCF 257
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 262 GSYSYTNTDGKPETITYFADETGYHAQGESIP 357
GS++ N +G E I +FA+E GY +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015
>At5g09910.1 68418.m01146 GTP-binding protein-related contains weak
similarity to GTP-binding protein yptV3.
(Swiss-Prot:P36862) [Volvox carteri]
Length = 431
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 578 FLYQMNFIVFVHDILKTQQIVKKNVQK 498
F Q+N ++FVHD+ +Q+ K N+QK
Sbjct: 91 FYSQINGVIFVHDL--SQRTTKTNLQK 115
>At4g24290.2 68417.m03488 expressed protein
Length = 606
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 162 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 79
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At4g24290.1 68417.m03487 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 162 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 79
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At1g66220.1 68414.m07516 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]; contains Pfam profiles: PF00082 Subtilase
family (3 copies)
Length = 753
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 330 SSLISEVRNGF-GFAVSVRVTVASSHSNNNVRLVVVVESLLQLTSFATYDAVGSL 169
+SL+ ++GF GFA + + A + S + L VV +++L + T+D +G L
Sbjct: 73 NSLVYNYKHGFSGFAAKLTASQAKNLSAHPEVLRVVPSRVMRLKTTRTFDYLGLL 127
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1
Query: 157 NYNFETSNGIVR---SETGELKEALDDD-NKPHVIVAVRGSYSYTNTDGKPETIT 309
+++ +T NG SET E+ + L D KP RG+Y TD K ++ T
Sbjct: 1053 DFSDKTENGSKEADHSETAEISKDLSDTVGKPESCSRTRGTYEAIGTDAKLKSNT 1107
>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 524
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 181 GIVRSETGELKEALDDDNKP 240
G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420
>At4g10530.1 68417.m01725 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 747
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 339 SMVSSLISEVRNGF-GFAVSVRVTVASSHSNNNVRLVVVVESLLQLTSFATYDAVG 175
+++ S++ R+GF GFA + + A S + V+ +L ++T+ T+D +G
Sbjct: 62 AVLDSIVYSYRHGFSGFAAKLTESQAQQISELPEVVQVIPNTLYEMTTTRTWDYLG 117
>At4g10520.1 68417.m01724 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 756
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 339 SMVSSLISEVRNGF-GFAVSVRVTVASSHSNNNVRLVVVVESLLQLTSFATYDAVG 175
+++ S++ R+GF GFA + + A S + V+ +L ++T+ T+D +G
Sbjct: 62 AVLDSIVYSYRHGFSGFAAKLTESQAQQISELPEVVQVIPNTLYEMTTTRTWDYLG 117
>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein ;
contains Pfam profiles PF00331: Glycosyl hydrolase
family 10, PF02018: Carbohydrate binding domain
Length = 752
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 341 RVNLFLRSPPPRAK-LLNSL 397
RV L+L PPPRA LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,714,209
Number of Sequences: 28952
Number of extensions: 228069
Number of successful extensions: 690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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