Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0503
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)            31   0.25 
SB_12954| Best HMM Match : MNHE (HMM E-Value=5.8)                      29   1.0  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   2.4  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       27   4.1  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_35374| Best HMM Match : Nucleoplasmin (HMM E-Value=8.5)             26   9.5  

>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
          Length = 441

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 28  DAPVFESQTGTNFSNEICTQQMFTIDFHGEGITLCNKKTNPQNYNLRNS 174
           D+ + ES+  +  SNE+C Q+M T+  +   I +  ++ +P N+  RNS
Sbjct: 218 DSTLPESRVNSPISNELCDQRMATLSKNTSPIAVTIRQYSP-NFGRRNS 265


>SB_12954| Best HMM Match : MNHE (HMM E-Value=5.8)
          Length = 463

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -1

Query: 277 RLPHPSNRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANYNFAGLFFYYTMLFLHRG 107
           R  H SN+  +++HG+NR       C   T  T  NY N   A L  + T L LH G
Sbjct: 169 RSVHSSNQ--IMIHGKNRPFQ-LKVCARITIETYLNYENAACAFLSLHQTKLSLHAG 222


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 301 LRPQV*LQRLPHPSNRNPLLLHGRNRQ 221
           LR Q  +QR P P+ RN + LHG   Q
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 196 LTTGPTTRNYANY-NFAGLFFYYTMLFLH 113
           L T PTT  +A Y N+A  ++ YT   LH
Sbjct: 464 LRTHPTTLMHATYYNYARTYYVYTSTLLH 492


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 302 SKASSIVTTAAPPFKPKPITASRQK*AGWWYLPVRTYNR 186
           +K+S   T + P   P P+        G++ LP+ TY R
Sbjct: 40  NKSSKPFTPSPPRCTPSPLPRRPNTTVGFYELPISTYTR 78


>SB_35374| Best HMM Match : Nucleoplasmin (HMM E-Value=8.5)
          Length = 285

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 231 EIGRVVVPTRADLQQVLPPGITQI 160
           +I RVV+P   D+ QV+ PG+  I
Sbjct: 12  DIHRVVIPELLDIHQVVIPGLFDI 35



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 231 EIGRVVVPTRADLQQVLPPGITQI 160
           +I RVV+P   D+ QV+ PG+  I
Sbjct: 144 DIHRVVIPELLDIHQVVIPGLFDI 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,108
Number of Sequences: 59808
Number of extensions: 273062
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)