Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0503
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical p...    27   6.2  
U41534-9|AAM22029.1|  690|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical...    27   6.2  
Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical pr...    26   8.2  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    26   8.2  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    26   8.2  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = -3

Query: 305 SSKASSIVTTAA-PPFKPKPITASRQ-----K*AGWWYLPVRTYNRSYHQELRKL*FCGF 144
           +S+ASSI TTA  PPF P+ I  + +     K AG   +    + +S H  +  L    F
Sbjct: 361 NSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISA-DFLKSCHDNVIDLITDRF 419

Query: 143 VFLLHN-VIPSPWKS 102
              LH+  +P PWK+
Sbjct: 420 NRYLHSRNVPKPWKT 434


>U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical
           protein C16A3.1a protein.
          Length = 687

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 338 AHRHLQRKCDISSKASSIVTTAAPPFKPKPI 246
           A  + +R+   ++ A++  ++AAPP  PKP+
Sbjct: 22  AAAYREREMQAAANATASTSSAAPPAPPKPV 52


>U41534-9|AAM22029.1|  690|Caenorhabditis elegans Hypothetical
           protein C16A3.1c protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 338 AHRHLQRKCDISSKASSIVTTAAPPFKPKPI 246
           A  + +R+   ++ A++  ++AAPP  PKP+
Sbjct: 22  AAAYREREMQAAANATASTSSAAPPAPPKPV 52


>U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical
           protein F30H5.5 protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 49  QTGTNFSNEICTQQMFTIDFHGEGITL 129
           Q  T   NE  T+Q+FT+D++   I +
Sbjct: 40  QVATRSMNETATRQLFTLDYNNPKINI 66


>AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical
           protein Y47G6A.32 protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 234 AEIGRVVVPTRADLQQVLPPGITQIIILRVCFFITQCYSFTVEVN 100
           A + RVV P R   + V   G  Q ++LR+C  + + +  +V VN
Sbjct: 68  ASLPRVVCPIRTTSRIVPCAGNAQQLLLRMCVCVLREHGDSVAVN 112


>Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical
           protein C34C12.2 protein.
          Length = 679

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 308 ISSKASSIVTTAAPPFKPKPI 246
           ISS +S   +T+AP + PKPI
Sbjct: 567 ISSSSSGSTSTSAPRYVPKPI 587


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 265 PSNRNPLLLHGRNRQGGGTYPCGLTTG 185
           P +  P L +G     GGTY C   TG
Sbjct: 102 PCSPQPCLQNGVCSSSGGTYSCACATG 128


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 135 ITQCYSFTVEVNREHLLSTYFIRKIGTRLGFEHRCI 28
           I QCYS  V VN++ ++S     ++GT + +  +CI
Sbjct: 197 ICQCYSGYVNVNQQCVISNGLNCQLGT-VSYNSQCI 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,989
Number of Sequences: 27780
Number of extensions: 205075
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)