Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0503
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    28   2.6  
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea...    27   3.4  
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea...    27   3.4  
At2g03450.1 68415.m00303 purple acid phosphatase (PAP9) identica...    27   4.5  
At4g02700.1 68417.m00365 sulfate transporter identical to sulfat...    27   5.9  
At3g51895.1 68416.m05692 sulfate transporter (ST1) identical to ...    27   5.9  
At1g58350.1 68414.m06637 expressed protein contains Pfam profile...    27   5.9  
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea...    26   7.8  

>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783; contains protein kinase domain
           Pfam:PF00069
          Length = 1296

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 216 VVPTRADLQQVLPPGITQIIILRVCFFITQC 124
           +V    D +Q LPPG+ + +  R+ F +T+C
Sbjct: 392 IVQDLDDRRQELPPGVLKQLHTRMLFILTRC 422


>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to UNR-interacting protein (WD-40 repeat protein
           PT-WD) (SP:Q9Y3F4) [Homo sapiens]
          Length = 343

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 362 TGGRAHSGAHRHLQRKCDISSKASSIVT 279
           TG   HS  H+H+ R C  S    S++T
Sbjct: 92  TGDVLHSFEHKHIVRACAFSEDTKSLLT 119


>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to UNR-interacting protein (WD-40 repeat protein
           PT-WD) (SP:Q9Y3F4) [Homo sapiens]
          Length = 343

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 362 TGGRAHSGAHRHLQRKCDISSKASSIVT 279
           TG   HS  H+H+ R C  S    S++T
Sbjct: 92  TGDVLHSFEHKHIVRACAFSEDTKSLLT 119


>At2g03450.1 68415.m00303 purple acid phosphatase (PAP9) identical
           to purple acid phosphatase [Arabidopsis thaliana]
           GI:20257481; contains Pfam profile: PF00149
           calcineurin-like phosphoesterase; contains
           metallo-phosphoesterase motif (PS50185)
          Length = 651

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 229 NRQGGGTYPCGLTTGPTTRN-YANYNFAGLFFYY 131
           N  G  T   G+  GP +RN Y +Y+   + F Y
Sbjct: 374 NMPGNSTEATGMVKGPQSRNLYYSYDMGSVHFVY 407


>At4g02700.1 68417.m00365 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:2130944
          Length = 646

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 217 GGTYPCGLTTGPTTRNYANYN 155
           G    C LTTGP +R+  NYN
Sbjct: 365 GSFSSCYLTTGPFSRSAVNYN 385


>At3g51895.1 68416.m05692 sulfate transporter (ST1) identical to
           sulfate transporter [Arabidopsis thaliana] GI:2285885
          Length = 658

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 217 GGTYPCGLTTGPTTRNYANYN 155
           G    C LTTGP +R+  NYN
Sbjct: 374 GSFTSCYLTTGPFSRSAVNYN 394


>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           supporting cDNA gi|6520166|dbj|AB028199.1|
          Length = 794

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  VEAMHRCSNPRRVPIFLMKYVLNKCSRLTS 109
           ++ MH   +P RVPI +++ VLN   R  S
Sbjct: 445 IQDMHILGDPMRVPIVIIERVLNAPRRTLS 474


>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb AF096285
           serine-threonine kinase receptor-associated protein from
           Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
           domains. EST gb|F14050 comes from this gene
          Length = 333

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 362 TGGRAHSGAHRHLQRKCDISSKASSIVT 279
           TG   HS  H+H+ R C  S     ++T
Sbjct: 87  TGDELHSFEHKHIVRACAFSEDTHRLLT 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,939
Number of Sequences: 28952
Number of extensions: 183570
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)