Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0502
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0510 + 24420402-24422582                                         31   0.58 
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    30   1.0  
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969...    28   4.1  
04_04_0036 - 22307328-22308026                                         27   9.5  
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    27   9.5  

>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 165 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 40
           D CF  + P+D+   GC S   +  SKC RC   S S + DA+
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 36  LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWLVPRS*SVALT 209
           L+A+ S +NC + +  +IS  H G   H    + + AGC ++ + H+    P+    A+ 
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK--DKAVD 782

Query: 210 RSALRVRTRRYV 245
           RS  ++    YV
Sbjct: 783 RSVEKLSNAFYV 794


>01_06_0542 +
           30096277-30096340,30096444-30096529,30096810-30096934,
           30097405-30097513,30097865-30097981,30098066-30098149,
           30098795-30098914,30099416-30099502,30100160-30100237
          Length = 289

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 114 HIQDHSCLRAGCIKNINHIAWLVPRS*SVALTRSALR 224
           HI   S L  G + N+N IA  VPR   VA  R+ LR
Sbjct: 183 HIGSFSFLGGGSVFNLNQIAQDVPRYMMVAGDRAELR 219


>04_04_0036 - 22307328-22308026
          Length = 232

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 144 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 46
           RP  R G    + +R V+    CRC+   C  HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147


>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 153 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 31
           +C  P + S  G ++ D  + S+C CS  S   S+H DA   A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,998
Number of Sequences: 37544
Number of extensions: 217122
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)