Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0501
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.089
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 33 0.27
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8) 30 1.9
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 30 2.5
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0) 29 3.3
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05) 29 5.8
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022) 28 7.7
SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +1
Query: 199 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 336
P P + PP P P YP PP N+ YP Y PP N
Sbjct: 139 PYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN 184
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 235 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 336
PP P P P Y PP N YP Y PP N
Sbjct: 133 PPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPN 166
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +1
Query: 196 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYY---PQNTYAPPQN 336
PP P + PP P P YP Y PP N Y P Y PP N
Sbjct: 151 PPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPN 200
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +1
Query: 196 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQN---TYAPPQN 336
PP + P PP P P P Y PP N+ YP + Y PP N
Sbjct: 104 PPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPN 153
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Frame = +1
Query: 196 PPIQWKPQNTWNAPP-KPIQPINTYP---QNNYAPPQNSYY---PQNTYAPPQN 336
PP + P + PP P P YP Y PP N+ Y P Y PP N
Sbjct: 84 PPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPN 137
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 34.7 bits (76), Expect = 0.089
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 345
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 429 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 469
Score = 34.7 bits (76), Expect = 0.089
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 345
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 436 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 476
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 208 WKPQNTWNAPPKPIQP-INTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 345
+ P++ + P K QP +Y P +Y PP SY P +Y PP +Y+
Sbjct: 406 YDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQ 455
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 345
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 422 PYKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 462
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 345
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 443 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPYKSYQ 483
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 214 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 345
P ++ P K QP P +Y PP SY P +Y PP +Y+
Sbjct: 457 PHKSYQPPHKSYQP----PHKSYQPPYKSYQPPYKSYQPPYKSYQ 497
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 718 CSFRLQPARLPLWHFDQG-LPE*QQVREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKS 542
C F L LW D+ P V W + GS + P SGR + + ++
Sbjct: 301 CDFGTSAPTLCLWRNDKNNTPTNDGVYNFNWFSHNGPTGSANTGPPSGRGGSGYYIYLET 360
Query: 541 TSPFSPGL 518
+SPF PG+
Sbjct: 361 SSPFQPGM 368
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 232 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 339
+PP P P ++ APP+ S P + APPQ T
Sbjct: 738 SPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQTT 773
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 646 VREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQC--KSTSP 533
+ EE+W +K + C CK CH+++C K T P
Sbjct: 131 ILEEKWEKEKKKFKCKCCGRVDCTCKKCHKIECEQKETEP 170
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 397 PVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVY- 573
P + E+YY D E A G G++G P E + +Y+Y GAD + Y
Sbjct: 1078 PYQEGEVYYYDEQGNIVEGYDA-GQVYGQDGQLLAPAVEATEAYGEEYYTYEGADQQAYP 1136
Query: 574 TVHYWADKTGYHAYGD 621
+ + + G Y D
Sbjct: 1137 SEQVYVEGQGEAQYAD 1152
>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
Length = 366
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 211 KPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 339
+P N N P IQP +TY Q + QN P +TY P +T
Sbjct: 17 QPNNPCN-PTTYIQPKDTYNQTTHTTQQNK-QPNDTYNPTTHT 57
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 214 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 345
P + +NA +P+Q + P PQ APP N+Y+
Sbjct: 645 PGSQYNASSEPVQMFDYLPPGQSGRSMRPSMPQYPQAPPYNSYQ 688
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 217 QNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 345
+NT PP P Q T N +PPQ N PP NT R
Sbjct: 475 ENTRRNPPPPSQDPTT---GNPSPPQEQPTTGNPTPPPNNTLR 514
>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
Length = 554
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +1
Query: 214 PQNTWNAPPKPIQP--INTYPQNNYAPPQNSYYP--QNTYAPPQNTY 342
PQ + PP +Q PQ Y PPQ Y P Q Y P Q Y
Sbjct: 237 PQGYGHPPPVDVQSGYAGQPPQQGYPPPQGGYPPPQQPGYNPQQPGY 283
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 196 PPIQWKPQNTWNAPP--KPIQPINTYPQNNYAPPQNSYYPQNT 318
PP Q P APP +P+QP + Y PPQ YP ++
Sbjct: 451 PPSQSTPSQ--QAPPTKQPMQPQHQYQARPGGPPQQRQYPPSS 491
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 466 HRRFDTRICNCHYHHNTFHS 407
HR F CNCHY +N +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772
>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 226 WNAPPKPIQPINTYPQNNYAPP 291
++ PP+ + TYP NNY PP
Sbjct: 14 YSQPPQGYPGVQTYPINNYPPP 35
>SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)
Length = 322
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 306 SSEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQ 407
S EY SKHLS L H +IS+ + S +D+
Sbjct: 71 SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 208 WKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYP---QNTYAP-PQNTY 342
+ P + + PP P Q Q +Y P YP Q +Y P PQ +Y
Sbjct: 302 YPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSYPPTSQQSYPPSPQQSY 350
>SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)
Length = 236
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = +1
Query: 220 NTWNAPPKPIQPINT---YPQNNYAPPQNSYYPQNTYAPPQNTY 342
N P+ QP+ YP PPQ Y PQ Y Q T+
Sbjct: 11 NRMQEGPEMAQPVTGQPGYPPQQGYPPQQGYPPQQGYPHAQTTH 54
>SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 436 SYKYEYQIADGTHVGEEGYFTNPNTE 513
S ++E +I DG G++G F + NTE
Sbjct: 43 STQWEVKIQDGARTGQKGIFRDDNTE 68
>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 232 APPKPIQPINTYPQNNYAPPQNSYY 306
APP P PI T PP N YY
Sbjct: 41 APPMPTVPIQTPSAPYQPPPSNDYY 65
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +1
Query: 202 IQWKPQNTWNAPPKPIQPINTYPQ---NNYA--PPQNSYYPQNTYAPP 330
+Q +P PP P N YP NYA PP Y PQ APP
Sbjct: 356 LQGQPPPGTYYPPPPQGNYNQYPVPGGQNYAGAPPPPYYPPQEYQAPP 403
>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPADKH--LSPKQLRPPSK 296
P+P P+ SK R T+ A KH LS + R P K
Sbjct: 307 PQPTKPLPASKEASRKTKKSAASKHRILSVRLHRKPKK 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,947,290
Number of Sequences: 59808
Number of extensions: 564804
Number of successful extensions: 1627
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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