Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0500
(836 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 9e-41
SB_40001| Best HMM Match : DUF1279 (HMM E-Value=0.7) 33 0.38
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10) 31 0.88
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_58835| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 29 4.7
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 29 4.7
SB_42714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 28 8.2
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7) 28 8.2
>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 164 bits (398), Expect = 9e-41
Identities = 78/105 (74%), Positives = 92/105 (87%)
Frame = +2
Query: 347 KKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFV 526
+KDNVAGV LPIFE DG+++YEL GL+RGGQQL+K ++ + AVKLLVELASLQTSFV
Sbjct: 2 RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELASLQTSFV 61
Query: 527 TLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFYR 661
TLDE IK+TNRRVNAIEHVIIPR+E T++YI+ ELDE EREEFYR
Sbjct: 62 TLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGELDEREREEFYR 106
>SB_40001| Best HMM Match : DUF1279 (HMM E-Value=0.7)
Length = 297
Score = 32.7 bits (71), Expect = 0.38
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Frame = +2
Query: 245 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNV--AGVTLPIFESYQDGS---D 409
+ A + AE FTT D N+ +++ + + K ++ N+ G T P +DG D
Sbjct: 58 RSAKQTTAETSFTTEDLNENLIRFQSDRRGKTLTQLRNLDKGGWTKPRQLFNEDGGVRQD 117
Query: 410 TYELAGLARGGQQLAKLKKNFQSAVKLLVELASL-QTSFVTLDEVIKITNRRVNAIEHVI 586
+L G +AK+ Q + + EL + T T+D+ +RR A E
Sbjct: 118 VAKLKGFKLAMGSVAKIDTVIQENTERVQELQGVVATDRETIDDPNTSESRRQEARE--- 174
Query: 587 IPRLERTLAYIISELDELERE 649
R E L SE+DELERE
Sbjct: 175 --RNEERL----SEIDELERE 189
>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
Length = 228
Score = 31.5 bits (68), Expect = 0.88
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 53 IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 223
I+MSG+ RG +LI G G GLLK AD L F + ++ ++ +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164
Query: 224 TLMGEVMKEAAF 259
+ E+M E +F
Sbjct: 165 EINPEIMLEKSF 176
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 440 HHGPNQPTHRYQNHPGMTQRLGG*HQQH 357
+H Q THRY HP +T R HQQH
Sbjct: 232 YHQHPQVTHRYHQHPQVTHRY---HQQH 256
>SB_58835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 30.3 bits (65), Expect = 2.0
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Frame = +2
Query: 266 AEAKFTTGDFNQ--VVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLAR- 436
AE FTT D N+ + Q+ + + I+ + + G T P ++G ++A L R
Sbjct: 53 AETSFTTEDLNENLIQFQSDRRGETLIQLRNLDKGGWTKPKQLFNENGGVRQDVAKLKRF 112
Query: 437 --GGQQLAKLKKNFQSAVKLLVELASL-QTSFVTLDEVIKITNRRVNAIEHVIIPRLERT 607
+A++ Q + + EL + T T+D+ +RR A E ER
Sbjct: 113 KAAMMSVAEIDAVIQENTERVQELQGVVATDRETIDDPNTSESRRQEARER----NEER- 167
Query: 608 LAYIISELDELERE 649
ISE+DELERE
Sbjct: 168 ----ISEIDELERE 177
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 741 TTCAAGSPTCWTRVMRTCCSKSILSTPYIAC 833
T CA+ TC T TCC ++ TPY AC
Sbjct: 282 TVCAS---TCTTACSPTCCFQTPSYTPYSAC 309
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 418 VGWFGPWWAAACKAQEEL 471
VGWF P W AC A+ +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358
>SB_42714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 28.7 bits (61), Expect = 6.2
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 413 YELAGLARGGQQLAKLKKNFQSAVKLLVEL-ASLQTSFVTLDEVIKITNRRVNAIEHVII 589
Y L R QQ K K F+ A+ + EL ++ T T+D+ +RR A E
Sbjct: 782 YPLFNKDRSIQQYVKNLKGFKLAIGPVAELQGAVATDRETIDDPNTPDSRRQEARE---- 837
Query: 590 PRLERTLAYIISELDELERE 649
R E L SE+DELERE
Sbjct: 838 -RNEERL----SEIDELERE 852
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 579 CSMALTRLFVILITSSRVTNEVCSDANSTKSFTALWK-FFLSFASCCP 439
CS A T LF S RV + VCS + FT L+ F LS C P
Sbjct: 958 CSRAFTSLFACFPMSVRVCSPVCS-----RVFTCLFACFHLSVRVCSP 1000
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +2
Query: 443 QQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYII 622
Q+L++L+KN +S VKL E + + L +I ++++N ++ I E+ ++
Sbjct: 745 QKLSELEKNEESLVKLASEAKKVLSEKQELSILINGISKKLNNLKE-ITSHFEKRELFLT 803
Query: 623 SELDELER 646
++ LER
Sbjct: 804 QKVLRLER 811
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 443 QQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLA 613
QQL+KL + S +L LASLQ + + + E K V+ + H I +R +A
Sbjct: 604 QQLSKLNAEYMSLCQLKTMLASLQNAGMGIIEKNKDDPTTVDELTHKIQEVTDRYVA 660
>SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)
Length = 233
Score = 28.3 bits (60), Expect = 8.2
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = +2
Query: 116 KGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDF 295
K +L A+ + L K K ++++ +K K + A + LA+AK+ +
Sbjct: 43 KSKLQLAIAKYKLAKAKYKLANAKYKLAKAKYKPAKAKYK--LANAKYKLAKAKYKLANA 100
Query: 296 NQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQ 475
+ KA+ K+ K A Y+ Y+LA LA +LAK K
Sbjct: 101 KY----KLAKAKYKVAKAKYKFANA------KYKLAKAKYKLAKLAIAKYKLAKAKYKLA 150
Query: 476 SA-VKLLVELA 505
+A KL+V +A
Sbjct: 151 NAKYKLVVLIA 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,808,769
Number of Sequences: 59808
Number of extensions: 473588
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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