Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0500
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   299   2e-81
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    38   0.007
Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   5.4  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   5.4  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  299 bits (734), Expect = 2e-81
 Identities = 139/199 (69%), Positives = 169/199 (84%)
 Frame = +2

Query: 65  GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 244
           GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 245 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 424
           KEAAFSLAEAKFT GDF+  V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L 
Sbjct: 65  KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124

Query: 425 GLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLER 604
           GL +GG  +A+LKKN+  A++LLVELA+LQT F+TLDE IK+TNRRVNAIEHVIIPR+E 
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIEN 184

Query: 605 TLAYIISELDELEREEFYR 661
           TL YI++ELDE+EREEF+R
Sbjct: 185 TLTYIVTELDEMEREEFFR 203


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +2

Query: 323 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLL 493
           K  IKI  +  ++  +   +FE+    +D +   ELA L  G Q+L K+KK+F++     
Sbjct: 21  KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFETGAVHN 80

Query: 494 VELASLQTSFVTLDEVIKIT 553
           +E    +T    L+E  K+T
Sbjct: 81  IENEDDETKIARLEERQKLT 100


>Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical
           protein T16G12.4 protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 588 MITCSMALTRLFVILITSSRVTNEVCSDANSTKSFTALWKFFLSF 454
           +ITCS  +  +F++++    +T+   S+A    ++   WK F  F
Sbjct: 103 IITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHEWKVFKDF 147


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 92  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 250
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 87  NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 92  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 250
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
            protein Y46G5A.1a protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 344  SKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELAS 508
            SK+D V     P   ++   S  Y+ +  +RGG  LA+  ++ +S   +L+  AS
Sbjct: 980  SKRDFVQSSNTPTTTTHSSSSHRYQHSNSSRGGTPLAQRLRDERSGQVVLLSRAS 1034


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -3

Query: 348 LDLILI*ALVTFCSTTWLKSPVVNLASAKEKAASFITSPIRVLVSMILLKII 193
           L  +++ ++VTFC + W++  +V     KEK A    S   +L++M L+K +
Sbjct: 181 LAFLMVTSVVTFCGSLWIRHFLVRF--LKEKTARL--SKTTILLNMQLVKAL 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,912
Number of Sequences: 27780
Number of extensions: 340959
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)