Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0500
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 833 TGYVWSAKYGLRTASPHHPGPASW*PRRASR 741
           T Y  + + G+R A+P +  P +W P    R
Sbjct: 497 TLYKIARREGIRLAAPFNASPTTWSPADLDR 527


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 342 GPRRTMLLVSPSQSLSHTRMVLIPMSWLVWPVVGSSL 452
           GP R +    P++ L H     IP  WLV+P    SL
Sbjct: 16  GPPRLLGWNVPAEELIH-----IPEHWLVYPEPNPSL 47


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 304 CATKCYQGSNQD*VQEGQCCW 366
           C+  C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,070
Number of Sequences: 438
Number of extensions: 3857
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)