Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0500
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   217   6e-57
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.41 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   1.3  
At3g19190.1 68416.m02436 expressed protein                             29   3.8  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    28   8.8  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    28   8.8  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  217 bits (531), Expect = 6e-57
 Identities = 106/203 (52%), Positives = 150/203 (73%), Gaps = 2/203 (0%)
 Frame = +2

Query: 59  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 235
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 236 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 412
           ++MK ++F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 413 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 592
            +L GLARGGQQ+   +  +  A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 593 RLERTLAYIISELDELEREEFYR 661
           +LE T++YI  ELDELERE+F+R
Sbjct: 181 KLENTISYIKGELDELEREDFFR 203


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 89  PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 268
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 269 EAKFTTGDFN 298
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 278 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 457
           F   D   +  Q   + Q     ++ +VAG  +P++ES    S+ +   G + GG+ L  
Sbjct: 46  FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104

Query: 458 LKKNFQSAVKLLVE 499
           L ++F+S  +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 519 EVCSDANSTKSFTALWKFFLSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 352
           EV    ++ + F  LWK F SF S C P    ++     P+   + +    PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 407 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 583
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 584 IIPRLERTLAYIIS 625
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 407 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 583
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 584 IIPRLERTLAYIIS 625
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,206
Number of Sequences: 28952
Number of extensions: 322610
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)