Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0497
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ...    31   1.8  
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ...    31   1.8  
AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-P...    31   1.8  

>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
           protein.
          Length = 1332

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 733 INIHE*YYYQIR*SSNIDPHSQSESRGT 650
           I+IHE   YQ   + + +P SQSESRGT
Sbjct: 877 ISIHEDQVYQAELTPSEEPSSQSESRGT 904


>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
           protein.
          Length = 1332

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 733 INIHE*YYYQIR*SSNIDPHSQSESRGT 650
           I+IHE   YQ   + + +P SQSESRGT
Sbjct: 877 ISIHEDQVYQAELTPSEEPSSQSESRGT 904


>AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-PA
           protein.
          Length = 1332

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 733 INIHE*YYYQIR*SSNIDPHSQSESRGT 650
           I+IHE   YQ   + + +P SQSESRGT
Sbjct: 877 ISIHEDQVYQAELTPSEEPSSQSESRGT 904


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,263,760
Number of Sequences: 53049
Number of extensions: 575260
Number of successful extensions: 942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)