Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0497
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle orienta...    29   3.9  
AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.      29   3.9  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U55363-5|AAA97963.1|  351|Caenorhabditis elegans Spindle
           orientation defective protein4 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 349 DNSDC**EYFFLKPPLY*GGGVFETFICIRSKNPECTK 462
           +N+ C  E  F+  P Y   G+F T   +++K P CTK
Sbjct: 170 ENTTCFPEAGFMMAP-YRSNGIFNTRSLVQTKPPRCTK 206


>AB052819-1|BAC65239.1|  351|Caenorhabditis elegans PIP-1 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 349 DNSDC**EYFFLKPPLY*GGGVFETFICIRSKNPECTK 462
           +N+ C  E  F+  P Y   G+F T   +++K P CTK
Sbjct: 170 ENTTCFPEAGFMMAP-YRSNGIFNTRSLVQTKPPRCTK 206


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 24.6 bits (51), Expect(2) = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 601 DSNSFGDMRLTDTTTIHEK 545
           D N+FGD++++D   I EK
Sbjct: 816 DFNTFGDVQISDVQRIDEK 834



 Score = 21.4 bits (43), Expect(2) = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 763 FLTTLYDGYHINIHE 719
           +++TLYD   + IHE
Sbjct: 790 YVSTLYDSSGVKIHE 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,597
Number of Sequences: 27780
Number of extensions: 307688
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)