Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0496
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4100| Best HMM Match : DUF1623 (HMM E-Value=3.7)                    29   3.1  
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)                       29   4.1  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   4.1  
SB_45763| Best HMM Match : CHORD (HMM E-Value=2.9)                     29   4.1  
SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)                     28   9.4  
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_4100| Best HMM Match : DUF1623 (HMM E-Value=3.7)
          Length = 183

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 494 SNTRRAHCGLGECVITINSYKNSLHLCNIFKCDTRK 601
           + TR+A    GE  I  N+ K   HL N+++C T+K
Sbjct: 58  AGTRKADSYYGEAFIA-NNVKVDAHLQNVYQCPTKK 92


>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
          Length = 249

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 720 LRYIIYMHCARLKFSFNCKPNIRIMRVLGHVIYALCNPLYLRVSHLNILHKC 565
           L+Y   +H  ++KF    KP+ RI R + HV+++   P     S   +  KC
Sbjct: 193 LQYTNIVHRMKMKFQGR-KPSRRIKRYVSHVVHSCIKPKSHGRSLKKVYQKC 243


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 385  CLKSPVRSSCKQRPKKMLCSKVSGTKTAMETKLAHSFKHATCTLRLG 525
            C  S  R++C QR K  +CS+V     A++T +  +    T T  LG
Sbjct: 1466 CCFSGCRNTCVQREKDDICSRVIDLAIAVDTSM--NMDRCTWTRNLG 1510


>SB_45763| Best HMM Match : CHORD (HMM E-Value=2.9)
          Length = 92

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 500 TRRAHCGLGECVITINSYKNSLHLCNIFKCDTRK 601
           TR+A    GE  I  N+ K   HL N+++C T+K
Sbjct: 60  TRKADSYYGEAFIA-NNVKVDAHLQNVYQCPTKK 92


>SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)
          Length = 111

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 264 CAICRTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMCNCYE 136
           C   +  + +   + + P F ++   +L+ +PA  F+ C C+E
Sbjct: 69  CVSKQAQQTQAKKSTHRPTFNQTFTFKLRGAPADLFNDCVCFE 111


>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = -2

Query: 309 LSRLTHVNYGSYKVRCAICRTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMCNCYEIC 130
           LSR   V Y        +C +    +   CYS L R  I+    +SP    SM  CY I 
Sbjct: 26  LSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRGMIVYYSYLSP----SMIVCYSIL 81

Query: 129 LRNYSLIFL*K*DIYWCCSIVYNLHYI 49
            R+  + +      Y+ CS+     Y+
Sbjct: 82  SRSRFVCY-----SYFSCSLFVCYSYL 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,558,671
Number of Sequences: 59808
Number of extensions: 441671
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)