Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0496
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic mul...    31   0.66 
AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical...    31   0.66 
AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical ...    28   8.2  

>DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic
           multivulva protein LIN-8 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 60  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 170
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical
           protein B0454.1 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 60  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 170
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1B.1 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/50 (22%), Positives = 21/50 (42%)
 Frame = +2

Query: 455 EQKRQWKQNWPIVSNTRRAHCGLGECVITINSYKNSLHLCNIFKCDTRKY 604
           E    W   +P  S+T  A   +       N   +++++C +  CD+  Y
Sbjct: 330 EHWNNWSPGYPTASSTDTAVINVNTSWQNTNPSLSNMYICEVAACDSANY 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,200,252
Number of Sequences: 27780
Number of extensions: 340963
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)