Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0496
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.1  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 39  INNKYNVDCKQYYSTNKY 92
           I+N Y  DC   YST  +
Sbjct: 183 ISNNYTTDCTIEYSTGNF 200


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 36  LINNKYNVDCKQYYSTNKY 92
           L+ N Y  DC Q YST  +
Sbjct: 214 LVKN-YTADCTQVYSTGNF 231


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 223 VLLTLVS*EHNNKTTNVSSNCLFNV 149
           +L+T V+  +NN      + CL N+
Sbjct: 467 ILMTTVNEGNNNMAATYMNECLLNI 491


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 666 KPNIRIMRVLGHVIYALCNPLYLRVSHLNILH 571
           + N+R++ V G  I ++ N  +  +++L ILH
Sbjct: 817 RKNMRVLYVNGSGIESIQNRTFNGLNNLQILH 848


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 231 KSPFVSSCKLHIVLCNYRNSHASSATKQYYKNKQ 332
           K P  + CK      N   +H S   +Q+ KN+Q
Sbjct: 31  KEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQ 64


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 42  NNKYNVDCKQYY 77
           NN YN +CK+ Y
Sbjct: 344 NNNYNNNCKKLY 355


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 557 FCKNLL*SHIHPSRSVHVAC 498
           F KNL  + I   R +HV+C
Sbjct: 102 FMKNLELTQIRRDRGLHVSC 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,849
Number of Sequences: 438
Number of extensions: 4637
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)