Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0495
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.2  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   3.9  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   5.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.2  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.2  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 492 GYVMSGSRHRRMEAVRIRKENQIY-SADEKRALAAFSKDER 611
           G V S S+ R+ +A    K + +Y SADE+  L  FSK +R
Sbjct: 253 GKVPSYSKLRKNKAFSSAKVSDMYLSADERNRLEDFSKGDR 293


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 715 VSAGAQDIYSY*VSRFCLALRTSLNWLRI 629
           +S G +DI++    ++C++L  +L WL I
Sbjct: 286 ISLGFRDIHAKEACQYCVSLEDALEWLII 314


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 572 ISRVDLVLFADTYCFHASMSAPTHDISNSFIGGNFIR 462
           ISR  L+  ++     A + A  H++ N + GG+FIR
Sbjct: 312 ISRSLLLAISNNIGQIAYLHAQKHNVQNIYFGGSFIR 348


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 510 SRHRRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLK 659
           S+H+R      R E++  S  E ++     KD+++K+E++  S+   V K
Sbjct: 595 SKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVSK 644


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +1

Query: 526 WKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTNKYL 699
           +K  ++ KRT  +R +    +   A+ +  + KT+   ++EM + P+K   + +NK +
Sbjct: 452 YKGPIARKRTSESRHLHYLMAK--AKRENADSKTIRKIAIEMRNVPNKIHGIQSNKLM 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,142
Number of Sequences: 5004
Number of extensions: 43019
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)