Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0495
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0377 + 17086775-17088310 113 1e-25
08_02_0974 + 23200053-23200167,23200184-23200665 75 5e-14
01_01_1172 - 9324919-9325071,9325425-9325570,9326986-9327039,932... 33 0.19
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 29 4.1
02_01_0635 + 4765200-4766144,4766392-4767006 29 4.1
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 29 5.4
12_02_0604 + 20920609-20922144 28 7.2
09_06_0240 + 21797458-21799369,21799636-21799784 28 7.2
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 9.5
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716... 28 9.5
>09_04_0377 + 17086775-17088310
Length = 511
Score = 113 bits (272), Expect = 1e-25
Identities = 62/147 (42%), Positives = 91/147 (61%)
Frame = +3
Query: 219 EEEIWVEKGKEHEVQQAQSKLCKDNEELSSEIIGPEARAIGSGALSVREXXXXXXXXXXX 398
E EI E K E+ +AQ K +NE +GP G +S
Sbjct: 353 EPEIDPEAIKFKEMLEAQKKAALENEMP----VGPMPLPRAEGHISY---GGALRPGEGD 405
Query: 399 XXXXFVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEK 578
+V GKRIPRRGE+GL+++EI +E +GYVMSGSRH+RM A+RIRKENQ+YSA++K
Sbjct: 406 AIAQYVQQGKRIPRRGEVGLSAEEIQKFEDLGYVMSGSRHQRMNAIRIRKENQVYSAEDK 465
Query: 579 RALAAFSKDERNKRENAILSQFRDVLK 659
RALA F+ +E++KRE+ +++ + +++
Sbjct: 466 RALAMFNYEEKSKREHKVMADLQRLVQ 492
>08_02_0974 + 23200053-23200167,23200184-23200665
Length = 198
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +3
Query: 492 GYVMSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFR 647
GYVMSGSRH R+ AVR+RKENQ+YSA+EKRALAAF+ ++R +RE+ + R
Sbjct: 124 GYVMSGSRHARITAVRLRKENQVYSAEEKRALAAFNSEQRARRESKVRDDLR 175
>01_01_1172 -
9324919-9325071,9325425-9325570,9326986-9327039,
9327647-9327866,9327976-9328083
Length = 226
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 573 EKRALAAFSKDERNKRENAILSQFRDVLKARQK 671
E ALA F+ DE NKRENA+L +F V++A+++
Sbjct: 20 ETDALARFAVDEHNKRENALL-EFVRVVEAKEQ 51
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 417 ADGKRIPRRGEIGLTSDEIASYEAVGYVMS 506
++GK I RRG +TSD IA E + ++S
Sbjct: 543 SEGKVIQRRGRFQVTSDSIAQKEVISRLIS 572
>02_01_0635 + 4765200-4766144,4766392-4767006
Length = 519
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -1
Query: 764 NVTAYHLQTGYTLIE--WCLCWGTRYXXXXXXXXXSGFEDISKLAKDSVFPFVPFVLAKC 591
N+ Y + G ++ W +C R+ FED + K + F F+PF +
Sbjct: 398 NIMGYDVPKGTNVLVNVWAICRDPRHWENAETFIPERFEDSTVDFKGTDFEFIPFGAGRR 457
Query: 590 GEGALLISRVDLVLFADTYCFHASMSAPT 504
L ++V + L + +H P+
Sbjct: 458 MCPGLAFAQVSMELALASLLYHFDWELPS 486
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 520 DAWKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDK---NEKLSTN 690
D+ + V A TR + R P P+ A T G + +T S S + +PDK E T
Sbjct: 615 DSSIENVKAITTRGGKSTRDPPYPNPAGTNGMSKETPSTDSDDKEIQPDKTVPQEYCDTR 674
Query: 691 KYLVPQQ 711
PQQ
Sbjct: 675 LLPFPQQ 681
>12_02_0604 + 20920609-20922144
Length = 511
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 549 ENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKARQKRE 677
E + SA+ + A A +KDE N R A+ + VLK + +E
Sbjct: 122 EGSLRSAESRGASEAAAKDEANARLEAVAEEKGHVLKLLRAKE 164
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 208 LVQVKKRYGWKKEKSMKFNRHNQNYVKTMKNY 303
L QVK+ Y W KE+ K R + VK N+
Sbjct: 443 LEQVKEAYEWAKEEYNKAGRRYEEAVKAKPNF 474
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 511 ADIDAWKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTN 690
+DI++ + S +++ L P P + T+ ++S S+ SS PD N + T+
Sbjct: 1036 SDINSSTNF-SIDAVKTSGLNSWTPVPVTNTVRSTHSNSISSTSVPSSSSPDNNPSMQTS 1094
Query: 691 KYLVP 705
+ P
Sbjct: 1095 QQEKP 1099
>02_05_0656 +
30671152-30671227,30671330-30671464,30671591-30671676,
30672184-30672278,30672431-30672556,30672659-30672809
Length = 222
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 447 EIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQ 557
+IG D + EAV V GS ++ A RI ENQ
Sbjct: 185 KIGKDKDGLLRKEAVREVYDGSLFTKLAAARINDENQ 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,185
Number of Sequences: 37544
Number of extensions: 298777
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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