Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0495
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55786| Best HMM Match : DUF926 (HMM E-Value=0) 136 1e-32
SB_29296| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0) 33 0.25
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28) 33 0.25
SB_13387| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27) 31 0.78
SB_50135| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_19108| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_2273| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_13552| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_53934| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_53089| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9) 29 4.2
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_13544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 29 4.2
SB_17082| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_12793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 29 5.5
SB_35822| Best HMM Match : DUF765 (HMM E-Value=3.3) 29 5.5
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4) 28 7.3
SB_13723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_13002| Best HMM Match : Ribonuc_2-5A (HMM E-Value=9.5) 28 7.3
SB_9470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_32645| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 9.6
SB_25891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1) 28 9.6
SB_10317| Best HMM Match : rve (HMM E-Value=8e-07) 28 9.6
SB_3631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_58927| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_55041| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_37910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092) 28 9.6
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_17162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_12826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_55786| Best HMM Match : DUF926 (HMM E-Value=0)
Length = 137
Score = 136 bits (330), Expect = 1e-32
Identities = 65/87 (74%), Positives = 76/87 (87%)
Frame = +3
Query: 411 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 590
+V GKRIPRRGEIGLTSDEIA++E GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA
Sbjct: 48 YVKAGKRIPRRGEIGLTSDEIATFEDQGYVMSGSRHRRMEAVRLRKENQIYSADEKRALA 107
Query: 591 AFSKDERNKRENAILSQFRDVLKARQK 671
F+ +ER+KREN ILS FR+++ + K
Sbjct: 108 MFNYEERSKRENKILSDFRELIHQKTK 134
>SB_29296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 33.5 bits (73), Expect = 0.19
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +3
Query: 426 KRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKD 605
K + RGE ++ +E S A Y M +RH+R R R++ + D+K+ +
Sbjct: 25 KALRARGE-AISEEESRSVFARNYCMIWARHKRCFKPRSRQKQSVRDFDKKKEDKIRQEQ 83
Query: 606 ERNKRENAILSQFRDVLKARQKR 674
E ENA++ F K R+KR
Sbjct: 84 EVLTDENAVIDGFP---KYRRKR 103
>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
Length = 278
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 193 VPAVT---LVQVKKRYGWKKEKSMKFNRHNQNYV 285
+P VT L QVKK Y W +S K N+HN +V
Sbjct: 232 LPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV 265
>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
Length = 265
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 193 VPAVT---LVQVKKRYGWKKEKSMKFNRHNQNYV 285
+P VT L QVKK Y W +S K N+HN +V
Sbjct: 142 LPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV 175
>SB_13387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.9 bits (69), Expect = 0.59
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 87 SCSFLVPNSCSPGXPLV 37
SC++ + NSCSPG PLV
Sbjct: 2 SCTYFISNSCSPGDPLV 18
>SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)
Length = 506
Score = 31.5 bits (68), Expect = 0.78
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 483 EAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKA 662
+ VG + S R E R+R++ AD + A++K+ER +E I Q R +L+
Sbjct: 424 DTVGGIASHITSLREEIRRLRQQLAKSEADYCEKMEAYAKEERQTKEENIRLQ-RKLLRE 482
Query: 663 RQKRE 677
++RE
Sbjct: 483 MERRE 487
>SB_50135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 81 SFLVPNSCSPGXPLV 37
SFL+ NSCSPG PLV
Sbjct: 15 SFLISNSCSPGDPLV 29
>SB_19108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
+S SF + NSCSPG PLV
Sbjct: 36 VSISFFLSNSCSPGDPLV 53
>SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 84 CSFLVPNSCSPGXPLV 37
CS+ + NSCSPG PLV
Sbjct: 28 CSYRISNSCSPGDPLV 43
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 219 EEEIWVEKGKEHEVQQAQSKLCKDNEELSSEI 314
EEE+ VE+ K ++Q+ ++CK+ EE+ E+
Sbjct: 2872 EEELNVERVKSAKLQRELVRVCKEKEEMDKEL 2903
>SB_2273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 88 FLLFPRAEFLQPGGXTS 38
FLL+ R EFLQPGG TS
Sbjct: 12 FLLYLRIEFLQPGGSTS 28
>SB_13552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 81 SFLVPNSCSPGXPLV 37
SFL+ NSCSPG PLV
Sbjct: 5 SFLLSNSCSPGDPLV 19
>SB_53934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
ISC NSCSPG PLV
Sbjct: 14 ISCGRFASNSCSPGDPLV 31
>SB_53089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
IS + ++ NSCSPG PLV
Sbjct: 9 ISANIIISNSCSPGDPLV 26
>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
Length = 678
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 453 GLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKEN 554
G++SDE +SYE + Y SG R + I +EN
Sbjct: 314 GVSSDESSSYEFIIYQSSGDIRHRTRSSDIGREN 347
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 314 HWSRGSCDRQWS 349
HWSRG DRQWS
Sbjct: 159 HWSRGDDDRQWS 170
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 559 STRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTNKYLVPQQRH 717
+T R P + T+GT T L + +++ D N + N+YL QQRH
Sbjct: 1827 ATNYCRHIPQQYPESTRGTT--TQCLQPITRATELDTNPRPLENEYLPHQQRH 1877
>SB_13544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
IS + ++ NSCSPG PLV
Sbjct: 9 ISANIVISNSCSPGDPLV 26
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 528 EAVRIRKENQIYSADEKRALAAFSKDERN-KRENAILSQFRDVLKARQKRET*YE*ISCA 704
EA R N+ S + LA S+D+ K E + S + + KR T + IS +
Sbjct: 420 EAPRKAITNRKLSHNHLNKLAEKSQDKNEEKSEKPVNSLKKPTARKSTKRVTFQDDISTS 479
Query: 705 PAETPLNQGITRLK 746
PAE ++ I RLK
Sbjct: 480 PAEPAVSPPIKRLK 493
>SB_17082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 78 FLVPNSCSPGXPLV 37
FL+ NSCSPG PLV
Sbjct: 20 FLISNSCSPGDPLV 33
>SB_12793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 78 FLVPNSCSPGXPLV 37
FL+ NSCSPG PLV
Sbjct: 15 FLISNSCSPGDPLV 28
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 41 SGSPGLQEFGTRKEQEIKRFQRQH 112
SGSPGLQEF KE++ +++ R H
Sbjct: 1440 SGSPGLQEF-DEKEKDTRQWTRLH 1462
>SB_35822| Best HMM Match : DUF765 (HMM E-Value=3.3)
Length = 138
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -3
Query: 84 CSFLVPNSCSPGXPLV 37
CSF V NSCSPG PLV
Sbjct: 11 CSF-VSNSCSPGDPLV 25
>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
Length = 220
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2
Query: 38 TSGSPGLQEFGTRK 79
TSGSPGLQEF RK
Sbjct: 14 TSGSPGLQEFDMRK 27
>SB_13723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 38 TSGSPGLQEFGTRKE 82
TSGSPGLQEF T+ +
Sbjct: 14 TSGSPGLQEFDTKNQ 28
>SB_13002| Best HMM Match : Ribonuc_2-5A (HMM E-Value=9.5)
Length = 91
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 38 TSGSPGLQEFGTRKEQEI 91
TSGSPGLQEF R E+ +
Sbjct: 14 TSGSPGLQEFDHRAERVV 31
>SB_9470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 38 TSGSPGLQEFGTRKEQEIK 94
TSGSPGLQEF +E++++
Sbjct: 14 TSGSPGLQEFDDDEEKKVQ 32
>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1320
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 222 EEIWVEKGKEHEVQQAQSKLCKDNEELSS 308
++IW + +H ++ QS LC D++E S
Sbjct: 1264 KQIWEQTSPQHTLRHKQSGLCLDSKEAKS 1292
>SB_32645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
IS + V NSCSPG PLV
Sbjct: 9 ISANISVSNSCSPGDPLV 26
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 550 RTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTNKYLV 702
R+R R RS SP RT+ + + S ++S PDK++ +KY++
Sbjct: 346 RSRPPRGRRSQ-SPRRRRTRSRSRRRCRSKSSSIASSPDKSKDEDMSKYML 395
>SB_25891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
IS + + NSCSPG PLV
Sbjct: 9 ISANIFLSNSCSPGDPLV 26
>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
Length = 405
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 417 ADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAAF 596
++GKR+PR L D ++ G + + HRR + + RK ++ ++ A
Sbjct: 267 SEGKRLPRNAAPFLIDDPVSWEVDFGESSNEAAHRRRQERKQRKIQKLREKLKRSKNTAD 326
Query: 597 SKDERNKRENA 629
DER + A
Sbjct: 327 LPDERLRSNGA 337
>SB_10317| Best HMM Match : rve (HMM E-Value=8e-07)
Length = 195
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 614 VPFVLAKCGEGALLISRVDLVLFADTYCFHASMSAPTHDISN 489
+P VL +G + + +FA T+CF +S+PT+ SN
Sbjct: 61 IPDVLVT--DGGPQLGSAEFAVFARTWCFDHILSSPTYAQSN 100
>SB_3631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 38 TSGSPGLQEFGTRKE 82
TSGSPGLQEF R E
Sbjct: 14 TSGSPGLQEFDKRAE 28
>SB_58927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 78 FLVPNSCSPGXPLV 37
+L+ NSCSPG PLV
Sbjct: 7 YLISNSCSPGDPLV 20
>SB_55041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 81 SFLVPNSCSPGXPLV 37
+F + NSCSPG PLV
Sbjct: 44 NFFISNSCSPGDPLV 58
>SB_37910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
+S F+ NSCSPG PLV
Sbjct: 7 LSLGFVPSNSCSPGDPLV 24
>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
Length = 1270
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = -3
Query: 522 VDVCSHS*HIQQLHRRQFHQM*VQFLLCVEF------SFRLPQKQPWQHLLQVVEHHQAP 361
V V +HS H Q+L +++ H + + L C++ R+ + L + E P
Sbjct: 354 VFVLNHSYHFQELPKQEDHIVQLNVLKCLQVLVLRGDYLRVAMEAEPDFLAYLQEIFFIP 413
Query: 360 *H*ELHCRSHEPLDQ*SPKIILHCL 286
EL H L + + +I+LHC+
Sbjct: 414 NLWELLQAEHSDLSEIATRILLHCI 438
>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 90 ISCSFLVPNSCSPGXPLV 37
I C V NSCSPG PLV
Sbjct: 28 IICICTVSNSCSPGDPLV 45
>SB_17162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 81 SFLVPNSCSPGXPLV 37
+F++ NSCSPG PLV
Sbjct: 102 TFILSNSCSPGDPLV 116
>SB_12826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 38 TSGSPGLQEFGTRKEQE 88
TSGSPGLQEF K+++
Sbjct: 14 TSGSPGLQEFDPTKDEK 30
>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 73 RAEFLQPGGXTSXERPPXR 17
R EFLQPG ERPP R
Sbjct: 31 RIEFLQPGDPLVLERPPPR 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,450,360
Number of Sequences: 59808
Number of extensions: 328156
Number of successful extensions: 2561
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2560
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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