Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0495
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...   113   1e-25
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    30   1.6  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    28   8.5  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    28   8.5  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/88 (57%), Positives = 69/88 (78%)
 Frame = +3

Query: 411 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 590
           + A G+RIPRRGEIGL+S EIA YE VGYVMSGSRH+ MEA R+RKENQ+++A+EKR L 
Sbjct: 416 YAARGERIPRRGEIGLSSGEIAEYEKVGYVMSGSRHKAMEATRLRKENQVFTAEEKRILN 475

Query: 591 AFSKDERNKRENAILSQFRDVLKARQKR 674
           + S + + K+E A+L QFR+++  +  R
Sbjct: 476 SVSVEAKKKKEEAVLDQFRNLIHHKNMR 503


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 441 RGEIGLTSDEIASYEAVGYV---MSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDER 611
           +G++  T D   S  + G+     +GSRH R  +   R     Y   +K   A+F+ +E+
Sbjct: 146 QGDLASTDDSGVSSASRGHTPNGSTGSRHVRAASTAGRFVKTDYEGKKKAHPASFANEEK 205

Query: 612 NKREN 626
            KR+N
Sbjct: 206 AKRKN 210


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +1

Query: 508 GADIDAWKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLST 687
           G+DI  WK+ +S     S  L  +  +P +   + +  KT+S+  + +  +  K+EKL+ 
Sbjct: 237 GSDIPDWKELMS-----SASLYFTNSNPFIDYPRASIQKTISIGGITVDFQQIKSEKLNK 291

Query: 688 NKYLVPQQRHHSIRV 732
               V  +R  S+ +
Sbjct: 292 EWEEVLNKRQKSMLI 306


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
            protein Y61A9LA.10 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 519  RRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKARQKRE 677
            R +  V ++K+  I    +KR     ++ E  KRE +I S+ +D+ +   K+E
Sbjct: 920  RTLNDVDLKKQENIKEGYKKRKAEEMAESEA-KREKSIKSRKKDISRVLSKKE 971


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,293
Number of Sequences: 27780
Number of extensions: 249631
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)