Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0495
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.26 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.78 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 361  LTLRAPLPIARASGPMISEDNSSLSL 284
            L LR PL + + + PMI +DN+SL+L
Sbjct: 1048 LNLR-PLSMEKGTRPMIPDDNTSLAL 1072


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 504 SGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKARQKRET 680
           S SR R  E  + R+ +Q+++ +EK      S+   ++        +++  + R+ RET
Sbjct: 252 SCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYSRSREREQKSYKNEREYREYRET 310


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 506 THDISNSFIGGNFIRCKSNFSSAWNSL 426
           +++ISN+F G N ++   N+   W  L
Sbjct: 270 SYEISNAFRGNNNLKWLVNWGEQWGFL 296


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 262 NRHNQNYVKTMKNY 303
           N +N NY K  KNY
Sbjct: 107 NNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 262 NRHNQNYVKTMKNY 303
           N +N NY K  KNY
Sbjct: 107 NNYNNNYKKLYKNY 120


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 731 YNPFEDGTPLHYW 769
           +NP  D  P+H W
Sbjct: 530 WNPLTDTVPIHTW 542


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 14  SPXWRPLXTSGSPGLQEFGTRKEQEIKRFQ 103
           SP  +    +G P  +  G   +QE+KR +
Sbjct: 528 SPPAKGAAAAGQPSKRNGGETNKQELKRLK 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,968
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)