Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0495
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02720.1 68417.m00368 expressed protein temporary automated f...   111   5e-25
At3g12490.2 68416.m01555 cysteine protease inhibitor, putative /...    34   0.090
At3g12490.1 68416.m01554 cysteine protease inhibitor, putative /...    34   0.090
At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger) fa...    31   1.1  
At3g28770.1 68416.m03591 expressed protein                             28   5.9  
At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /...    28   7.9  
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi...    28   7.9  
At3g13070.1 68416.m01634 CBS domain-containing protein / transpo...    28   7.9  

>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score =  111 bits (267), Expect = 5e-25
 Identities = 49/89 (55%), Positives = 69/89 (77%)
 Frame = +3

Query: 411 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 590
           +V  GKRIPRRGE+GL ++EI  +E +GYVMSGSRH+RM A+RIRKENQ+YSA++KRALA
Sbjct: 316 YVQQGKRIPRRGEVGLNAEEIQKFEDLGYVMSGSRHQRMNAIRIRKENQVYSAEDKRALA 375

Query: 591 AFSKDERNKRENAILSQFRDVLKARQKRE 677
            F+ +E+ KRE  ++S  + +++     E
Sbjct: 376 MFNYEEKAKREAKVMSDLQRLVQRHMGEE 404


>At3g12490.2 68416.m01555 cysteine protease inhibitor, putative /
           cystatin, putative similar to PRLI-interacting factor M
           [Arabidopsis thaliana] GI:11139270, cysteine proteinase
           inhibitor [Brassica rapa] GI:762785; contains Pfam
           profile PF00031: Cystatin domain
          Length = 201

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = +3

Query: 564 SADEKRALAAFSKDERNKRENAILSQFRDVLKARQK 671
           ++ E  +LA F+ DE NK+ENA+L +F  V+KA+++
Sbjct: 15  NSGEVESLARFAVDEHNKKENALL-EFARVVKAKEQ 49


>At3g12490.1 68416.m01554 cysteine protease inhibitor, putative /
           cystatin, putative similar to PRLI-interacting factor M
           [Arabidopsis thaliana] GI:11139270, cysteine proteinase
           inhibitor [Brassica rapa] GI:762785; contains Pfam
           profile PF00031: Cystatin domain
          Length = 201

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = +3

Query: 564 SADEKRALAAFSKDERNKRENAILSQFRDVLKARQK 671
           ++ E  +LA F+ DE NK+ENA+L +F  V+KA+++
Sbjct: 15  NSGEVESLARFAVDEHNKKENALL-EFARVVKAKEQ 49


>At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 556 RSTRLMRSAPSPHLARTKGTNGKTLSLASLEM 651
           RSTR M S P P L+ T+G++ K +   +L M
Sbjct: 85  RSTRFMISEPVPSLSSTRGSSNKGIKKKALRM 116


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 234 VEKGKEHEVQQAQSKLCKDNEELSSEIIGPEAR 332
           VEKG++ E + A+S   KDN++LSS     EA+
Sbjct: 785 VEKGEKKESKDAKSVETKDNKKLSSTENRDEAK 817


>At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /
           cystatin, putative similar to cysteine proteinase
           inhibitor [Glycine max] GI:1944342; contains Pfam
           profile PF00031: Cystatin domain
          Length = 232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 585 LAAFSKDERNKRENAILSQFRDVLKARQK 671
           +A F+  E N+RENA+L   R VLKA ++
Sbjct: 64  IALFAVQEHNRRENAVLELAR-VLKATEQ 91


>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 642

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +1

Query: 535 YVSAKRTRSTRLMRSAPSPHLA-RTKGTNGKTLSLASL---EMSSKPDKNEKLSTNKYLV 702
           YVSA+   + R + S P  HL+ R K T  + + + S+   E S KP +  KLS     V
Sbjct: 3   YVSARSGSAKRSISSLP--HLSQRFKQTENEIVQMFSVPNHEESEKPQEKWKLSRKDPSV 60

Query: 703 PQQRHHSIRV*PV*RW 750
                  IR+  + +W
Sbjct: 61  RMLDERFIRIVKIFKW 76


>At3g13070.1 68416.m01634 CBS domain-containing protein /
           transporter associated domain-containing protein similar
           to SP|Q54318 Hemolysin C [Serpulina hyodysenteriae]
           {Treponema hyodysenteriae}; contains Pfam profiles
           PF00571: CBS domain, PF03471: Transporter associated
           domain, PF01595: Domain of unknown function
          Length = 661

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 EEEIWVEKGKEHEVQQAQSKLCKDNEELSSEIIGPEARAIGS 344
           E+E W E G+E E +Q + +  + N+    EI+   AR + +
Sbjct: 557 EKESWEEDGEEEEGKQERQEPKEKNQIYRVEILAGNARKVSA 598


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,238
Number of Sequences: 28952
Number of extensions: 231026
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)