Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0494
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   0.83 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   1.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   4.5  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.8  

>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 174 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 61
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 429 RGRVSRLYTEQAPSLPPQQF 370
           RG+V RLYTE+A SL  ++F
Sbjct: 359 RGKVFRLYTEKAYSLMKEEF 378


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 87  PSVCLSPPWQRQPRPTMPPK*PCTS 13
           P   L PP    PRP++PP  P ++
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASA 157


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 2   GDHNEVHGYFGGIVGRGCLCQGG 70
           G H  +HG  GG  GRG    GG
Sbjct: 114 GHHGPLHGPHGGFGGRGGGRMGG 136


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 164 ATSEIMSSIRSYVIDAPFVLFLLFDCL 84
           A S I+SSI  Y +     L LL+DC+
Sbjct: 700 AYSSILSSIEEYHLRFGLKLMLLWDCV 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,658
Number of Sequences: 5004
Number of extensions: 22426
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)