Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0494
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   3.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   3.9  
U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protei...    27   5.2  
U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protei...    27   5.2  
U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protei...    27   5.2  
U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protei...    27   5.2  

>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 179 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 21
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N     H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 176 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 60
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -3

Query: 174 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 1
           S H     Y   +  C  CP  +    R+P  C +P     P P  PP  PC + + P
Sbjct: 12  SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66


>U80437-4|AAK68244.1|   90|Caenorhabditis elegans Neurabin protein
           1, isoform c protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 72  SPPWQRQPRPTMPPK*PCTSLWSP 1
           SP  QRQP P +PPK P     SP
Sbjct: 37  SPRLQRQPPPPLPPKPPSQCPPSP 60


>U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protein
           1, isoform b protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 72  SPPWQRQPRPTMPPK*PCTSLWSP 1
           SP  QRQP P +PPK P     SP
Sbjct: 37  SPRLQRQPPPPLPPKPPSQCPPSP 60


>U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protein
           1, isoform d protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 72  SPPWQRQPRPTMPPK*PCTSLWSP 1
           SP  QRQP P +PPK P     SP
Sbjct: 37  SPRLQRQPPPPLPPKPPSQCPPSP 60


>U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protein
           1, isoform a protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 72  SPPWQRQPRPTMPPK*PCTSLWSP 1
           SP  QRQP P +PPK P     SP
Sbjct: 37  SPRLQRQPPPPLPPKPPSQCPPSP 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,921,139
Number of Sequences: 27780
Number of extensions: 135816
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)