Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0494
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    30   0.70 
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ...    28   2.8  
At3g52680.1 68416.m05803 F-box family protein contains F-box dom...    28   3.7  
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr...    28   3.7  
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea...    27   6.5  
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea...    27   6.5  
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea...    27   8.6  

>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 87  PSVCLSPPWQRQPRPTMPPK*PCT 16
           PS C SPP + QP+P  PP  P T
Sbjct: 48  PSPCPSPPPKPQPKPVPPPACPPT 71



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 87  PSVCLSPPWQRQPR-PTMPPK*PCTS 13
           PS C SPP + QP+ P  P   PC S
Sbjct: 28  PSPCPSPPPKPQPKPPPAPSPSPCPS 53


>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 513

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 132 LCHRCPFCLVSSLRLPSVCLSPP 64
           LC RC   L SS  +PSV + PP
Sbjct: 331 LCVRCALYLCSSSNVPSVTVGPP 353


>At3g52680.1 68416.m05803 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 131 YVIDAPFVLFLLFDCLRC 78
           YVI+APF+ +LL + LRC
Sbjct: 238 YVINAPFLKYLLIEELRC 255


>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 435

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 201 ALHSFRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRL 88
           A+H +       R     ++H+++ H C FC  SSL L
Sbjct: 397 AVHLWNRESKKLRIEEGSIIHQLMSHSCIFCNSSSLHL 434


>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 94  STAFGVPFSSLAKATTANDATK 29
           S AFG  + S +K+TTANDA++
Sbjct: 305 SEAFGKFYGSQSKSTTANDASE 326


>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 94  STAFGVPFSSLAKATTANDATK 29
           S AFG  + S +K+TTANDA++
Sbjct: 305 SEAFGKFYGSQSKSTTANDASE 326


>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           identical to putative ARP2/3 protein complex subunit p41
           (GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
           complex 41 kDa subunit (P41-ARC) (Actin-related protein
           2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
          Length = 378

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 94  STAFGVPFSSLAKATTANDAT 32
           S AFG  + S +K+TTANDA+
Sbjct: 305 SEAFGKFYGSQSKSTTANDAS 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,634,891
Number of Sequences: 28952
Number of extensions: 132005
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)