Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0491
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   1.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.5  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 82  VVSALQVGVADRFADVRGAAEVDDLDPVRLPSRLHQHYVLRLQVRVDQAELLSNEIKHVK 261
           +V A Q  + D  A+VR AA     D  +   + HQ  ++   +     EL+++  +HVK
Sbjct: 285 LVPAFQNLLKDTEAEVRAAAANKVKDFCQNLDKAHQESIIMNNILPCVKELVADPNQHVK 344


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 568 RKVFHPAFTQS 536
           RK FHPA TQS
Sbjct: 255 RKPFHPASTQS 265


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 204 PENIM-LVEPARQPYRVKVIDFGSASHVSKAVCNTYL 97
           P N++ L  P  +P    +ID G A   +  +CN YL
Sbjct: 140 PGNVLNLTMPKYEP-NPSIIDPGPALPPAGFLCNNYL 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,638
Number of Sequences: 336
Number of extensions: 3158
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)