Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0491
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    36   4e-04
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                31   0.009
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    29   0.037
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.7  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 228 GLIHADLKPENIMLVEPARQPYRVKVIDFGSASHV 124
           G++H DLKPEN++L   A+    VK+ DFG A  V
Sbjct: 29  GVVHRDLKPENLLLASKAKGA-AVKLADFGLAIEV 62


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = -1

Query: 228 GLIHADLKPENIMLVEPARQPYRVKVIDFGSA 133
           G++HAD+KP+NI++ +   QP   K+ DFGS+
Sbjct: 175 GIVHADVKPKNILMSKNG-QP---KLTDFGSS 202


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -1

Query: 225 LIHADLKPENIMLVEPARQPYRVKVIDFGSASHV 124
           +I+ DLKPEN++L     Q Y VK++DFG A  +
Sbjct: 487 IIYRDLKPENLLL---DSQGY-VKLVDFGFAKRL 516


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 228 GLIHADLKPENIML-VEPARQPYRVKVIDFG 139
           GL+H D+K +N++L +E      R K+ DFG
Sbjct: 717 GLVHRDVKLKNVLLDIE-----NRAKLTDFG 742


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 228 GLIHADLKPENIML-VEPARQPYRVKVIDFG 139
           GL+H D+K +N++L +E      R K+ DFG
Sbjct: 755 GLVHRDVKLKNVLLDIE-----NRAKLTDFG 780


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 380 YQPHDEKLKLKPHGSRMTL 436
           +QP D KL +K  GS+  L
Sbjct: 48  FQPTDNKLAMKLFGSKKAL 66


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 380 YQPHDEKLKLKPHGSRMTL 436
           +QP D KL +K  GS+  L
Sbjct: 48  FQPTDNKLAMKLFGSKKAL 66


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 380 YQPHDEKLKLKPHGSRMTL 436
           +QP D KL +K  GS+  L
Sbjct: 48  FQPTDNKLAMKLFGSKKAL 66


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 235 ATRPDPRGPEAGEHNAGGAGSAAVPG 158
           A  P P     G   AG AG A  PG
Sbjct: 49  AATPTPPSVPVGSAVAGTAGGALFPG 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,894
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)