Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0487
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    37   3e-04
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.15 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 290 DKKPDPTFEVCDIEVKIADLGNACWV-HRHFTEDI-QTRQYRSLEVLLSAGYGTSADIWS 463
           D KP+         VK+ D G A  + H   T     T +Y + EV+L+ G+  SAD WS
Sbjct: 491 DLKPENLLLDSQGYVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVILNKGHDISADYWS 550

Query: 464 TACMAFELATG 496
              + FEL TG
Sbjct: 551 LGVLMFELLTG 561


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 332 VKIADLGNACWVH---RHFTEDIQTRQYRSLEVLLSAGYGTSADIWSTACMAFELATG 496
           VK+AD G A  V    + +     T  Y S EVL    YG   DIW+   + + L  G
Sbjct: 51  VKLADFGLAIEVQGEAQAWFGFAGTPGYLSPEVLKKEPYGKPVDIWACGVILYILLVG 108


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 24  LLCLKIMMIHLRHQRKQVSLI*HSLKMIQQ 113
           + C  +    + HQRK  + + HS+K+I +
Sbjct: 13  IACQDVTSAAVNHQRKSANNLAHSMKVIYE 42


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 239 TDTPPSFNSLSTN 277
           T+TPPS+N L+ N
Sbjct: 536 TETPPSYNQLNYN 548


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 165 SMLYVSSSLAWTSLH 121
           +++++SSSL W+S H
Sbjct: 486 NLIFMSSSLQWSSTH 500


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 165 SMLYVSSSLAWTSLH 121
           +++++SSSL W+S H
Sbjct: 524 NLIFMSSSLQWSSTH 538


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 409  FLRSAPKCWVWNVSRYMEHSLYGI 480
            +LR+A     WN  R+ E   Y I
Sbjct: 1181 YLRTAAAILTWNEKRFWERLRYAI 1204


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 437 YGTSADIWSTACMAFELAT-GDYL 505
           Y  + D+W   CM F  A  G+++
Sbjct: 258 YVKALDVWMAGCMMFVFAALGEFV 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,224
Number of Sequences: 438
Number of extensions: 4753
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)