Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0485
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.083
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   2.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    26   5.4  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   7.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   9.5  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +2

Query: 446 VENIIVRFLNEIKMSPLSNFYFQIEHSERNSNNKSFFY 559
           V N+   FL +IK SP S   F+IE S R S+NK F++
Sbjct: 491 VANLSSMFL-DIKYSPSSEHIFEIESSLRLSSNKVFYH 527


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -1

Query: 397 TSYEVPAPTDVFKALPTKRLSCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPA 218
           T+  V   T   +  P   +  T   +  SPP +    G   T    T R +++P+  P 
Sbjct: 132 TNSNVGMTTRSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPK 191

Query: 217 DGAFEAARQ 191
           D + E A Q
Sbjct: 192 DASNETADQ 200


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/80 (17%), Positives = 31/80 (38%)
 Frame = -2

Query: 408 AGVEPPTRYPRLRMFSRPYPLNDSPALFAQTSDPLRGQNPDEVRGLPRLTLQPDGAAHPK 229
           + +EPP         + P P N+  ++ A  +  L   +  +      L +     + P 
Sbjct: 251 SSIEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPS 310

Query: 228 DARPTEPSRRHVKPPRRCRW 169
           ++ P++P+    + P    W
Sbjct: 311 NSTPSKPNTSFFETPHNNIW 330


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = +3

Query: 12  VKVTGRPEGVEAA-WRATSTLARCLGDTKE------QPVGGVMRPDPAGWFWSSGVFRYT 170
           V  + +P+G  +A W  T T+    G  KE       P+  + +  P GW W    F  T
Sbjct: 256 VATSKKPDGFRSAKWVFTETIYDQAGYIKEVDDANGNPIASLSKIVPKGWQWCLSYFA-T 314

Query: 171 SGTV 182
           +G +
Sbjct: 315 AGVI 318


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 190 AAQTV-PLVYRNTPLDQNQPAGSGRITPPTGCSFVSPRQRARVLVARHAASTPSGRPVT 17
           AA T+ PL   NTPL  +Q        P    S  SPR +    V R A+   S RPVT
Sbjct: 210 AATTLKPLQLHNTPLQTSQEHPKPSFHPSQFESSFSPRVQFDHDVERRASELHS-RPVT 267


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 493 RGHFYLI*KPYYYVLHIRLFFFAGTLFSGRGRTSYEVPAPTDVFKALP 350
           R  F+L+  P Y++ HI+  F     F+ R +T   V  P D F   P
Sbjct: 378 RRRFHLMTAPPYFIFHIKR-FMKNNYFTERNQTI--VTFPLDDFDMSP 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,383
Number of Sequences: 5004
Number of extensions: 68790
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)