Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0485
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 36 0.049
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 32 0.61
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 31 0.80
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 31 1.1
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 31 1.4
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 30 1.9
01_07_0346 + 42889121-42890406,42896115-42896118 30 1.9
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 30 2.5
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 29 4.3
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 29 4.3
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 5.7
05_02_0049 - 6083364-6084111,6084140-6084246 29 5.7
04_04_0882 + 29061504-29061512,29061852-29061964,29062371-290623... 29 5.7
12_01_0646 + 5474234-5476189 28 7.5
05_01_0058 + 415145-415210,415888-415906,415971-416083,416495-41... 28 7.5
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 28 7.5
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638... 28 9.9
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 35.5 bits (78), Expect = 0.049
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Frame = -1
Query: 382 PAPTDVFKALPTKRL-SCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSP-QGRPADGA 209
PAP+ ++ P++R+ S RP+ SPP + T +RR SP + R
Sbjct: 263 PAPSPRRRSPPSRRVESPRCRPD--SPPIRRRTAPSPIRHGGTPSRRPGSPIRRRSPSPP 320
Query: 208 FEAARQAAQTVPLVYRNTPLDQNQPAGSGRITPPTGCSFVSPRQRARVLVARHAASTPSG 29
R P R +P+ + P R+TPP SP +R + L RH + +P
Sbjct: 321 PRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPR--RMWSPPRRPQSL--RHRSRSPIH 376
Query: 28 RPV 20
RP+
Sbjct: 377 RPI 379
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 31.9 bits (69), Expect = 0.61
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = -2
Query: 303 RGQNPDEVRGLPRLTLQPDGAAHPKDARPTEPSRRHVKPPRRCRWCTGIPR*TRTSLLDR 124
+ Q P R P L + HP + + P + P CR T P + + +DR
Sbjct: 13 KSQGPTTARRRPLRLLPGNRTPHPPPPQGSRPRKPAPTPAAACRPATACPPASDAAAIDR 72
Query: 123 DALHRQPVALLY-----LLGSALEC 64
L R +A L L+ +ALEC
Sbjct: 73 LLLARSDLAGLVSQIDELVCAALEC 97
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 31.5 bits (68), Expect = 0.80
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = -1
Query: 277 GVTAVNTTTRRRSSPQGRPADGAFEAARQAAQTVPLVYRNTPLDQNQPAGSGRITPPTGC 98
G +++ RR+S G A A A A+T +TP + AG GR T P+
Sbjct: 8 GRASISPFRSRRTSAAGGGAGVAAAAHPPPARTSSGGRPSTPSSSSSAAGGGRPTTPSSS 67
Query: 97 SFVSPRQRARVLVARHAASTP-SGRPVT 17
S AR ++TP SGRP T
Sbjct: 68 SAGGRPTTPSAAFAR--STTPSSGRPTT 93
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -1
Query: 388 EVPAPTDVFKALPTKRLSCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPADG- 212
E PAP ALP + + + + SPP G G G++ V ++ G ADG
Sbjct: 282 ETPAPPTTPPALPPATTAPSPKNSSSSPPPPCTGGGGGISNVFDVRAFGATGNGSSADGD 341
Query: 211 --AFEAARQAA 185
AF AA +AA
Sbjct: 342 TRAFRAAWKAA 352
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = -1
Query: 337 SCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPADGAFEAARQAAQTVPLVYRN 158
SC+L +PP+ SSP P + A EAA A + +
Sbjct: 363 SCSLSSPPAAPPKMAAASPPAAAPAPAPEMAPSSPPAEPPETATEAAGSAVRPASIKLEK 422
Query: 157 ------TPLDQNQPAGSGRITPPTGCSFV 89
+P D + + S R P+ CSF+
Sbjct: 423 DDTTGTSPADTAKSSSSNRSPHPSSCSFL 451
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 352 PTKRLSCTLRPNVRSPPRSEPG*GKG--VTAVNTTTRRRSSPQGRPADGAFEAARQAAQT 179
P + LS PN R+PP + K + + TTRRR P P GA A A +
Sbjct: 11 PFRDLSNLRTPNPRAPPNPKSSASKEEPLPSATPTTRRRRGPPPPPRPGAATATPLARR- 69
Query: 178 VPLVYRNTPLDQNQPA 131
R LDQ++ A
Sbjct: 70 ----LRALELDQSRSA 81
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -1
Query: 91 VSPRQRAR--VLVARHAASTPSGRPVT 17
VS R+RAR VARH+A+TPS P T
Sbjct: 140 VSSRRRARRAAAVARHSAATPSSAPPT 166
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/70 (32%), Positives = 32/70 (45%)
Frame = -2
Query: 279 RGLPRLTLQPDGAAHPKDARPTEPSRRHVKPPRRCRWCTGIPR*TRTSLLDRDALHRQPV 100
RG+ P A+HP AR S V+PP + R + + SLLD A ++P
Sbjct: 46 RGVAVAVAPPLRASHPDTARRVSVSPAAVEPPPKPR---ALLDAIKRSLLDSLAALKKPA 102
Query: 99 ALLYLLGSAL 70
L L G+ L
Sbjct: 103 LALLLAGALL 112
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 283 GKGVTAVNTTTRRRSSPQGRPADGAFEAARQAAQTVPLV 167
G G+ A T + GR G F +AR++A +VP +
Sbjct: 564 GSGIGAFGTGLSKAGKFVGRTVTGPFSSARRSASSVPTI 602
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -2
Query: 402 VEPPTRYPRLRMFSRPYPLNDSPALFAQT-SDPLRGQNPDEVRGLPRLTLQPDGAAHPKD 226
+ P T YP L+ S P PL + A ++ S+ ++ V P P+ AA P
Sbjct: 396 LSPYTNYPDLKPPSSPSPLAPAEATKNESESESAATESAPAVNSAPVAEAAPE-AAPPAA 454
Query: 225 ARPTEPSRRH--VKPP 184
RP P + +KPP
Sbjct: 455 PRPLSPYPNYPDLKPP 470
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 330 LFAQTSDPLRGQNPDEVRGLPRLTLQPDGAAHPKDARPTEPS 205
L A D + G+ PD R QP A P+D +P PS
Sbjct: 182 LDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPS 223
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 28.7 bits (61), Expect = 5.7
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = -1
Query: 325 RPNVRSPPRSEPG*GKGVTAV-----NTTTRRRSSPQGRPADGAFEAARQAAQTVPLVYR 161
+PN PP G G TA + RRRS G PAD A AA +R
Sbjct: 10 KPN--PPPAMANAGGGGATASFPAPKSQMRRRRSGGAGVPADAASAAASAGRCWSSSSWR 67
Query: 160 NTPLDQNQPAGSGRITPPTGCSFVSPRQRARVLVARHAASTPSGRPVT 17
++P P+ + R T T + + R L A + +S+P+ +T
Sbjct: 68 SSP-----PSPAARSTCSTARTAPASPSRPSKLTALNLSSSPTSPSLT 110
>04_04_0882 +
29061504-29061512,29061852-29061964,29062371-29062398,
29062690-29062734,29063379-29063456,29063573-29063597,
29063690-29063722,29063793-29063914,29064015-29064145,
29064242-29064468,29065175-29065431,29065859-29065945
Length = 384
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 229 GRPADGAFEAARQAAQTVPLVYRNTPLDQNQPAGSGRITPPTGCSFVSPRQRARVLVARH 50
G+ DG +A++ A VP R++P D N+ + P + + S RQ++ LV
Sbjct: 289 GKRLDG--KASKLQATEVPSASRSSPSDSNKRVNQETLAPASSGASNSTRQKSGKLVFGS 346
Query: 49 AAS 41
+A+
Sbjct: 347 SAN 349
>12_01_0646 + 5474234-5476189
Length = 651
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 291 GSDLGGDRTFGRRVQESRLVGRALKTS 371
G DL DR FGR ++ +VG TS
Sbjct: 183 GKDLNADRVFGRENEKEHIVGWLTNTS 209
>05_01_0058 +
415145-415210,415888-415906,415971-416083,416495-416572,
416731-416975,417083-417188
Length = 208
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 382 PAPTDVFKALPTKRLSCTLRPNVRSPPRSE-PG*GKGVTAVNTTTRRRSSPQGRPADGAF 206
PAP L ++ + C+L P V SP RSE G G ++ + RR QG D +
Sbjct: 129 PAPDSSPDPLLSQFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRRE---QGVMDDASK 185
Query: 205 EAARQAAQTVPLV 167
E + Q + V
Sbjct: 186 EELEERLQRIEFV 198
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -2
Query: 252 PDGAAHPKDARPTEPSRRHVKPPRRCRWCTGIPR*TRTSL 133
P GAA K P H +PP + C G P T L
Sbjct: 82 PPGAAFAKGVLAAAPPPPHGRPPHKLMVCKGAPTVTDVKL 121
>08_01_0718 -
6365506-6366047,6381623-6381937,6382857-6383082,
6383295-6383458,6383498-6383934,6384395-6384669
Length = 652
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 313 RSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPADGAFEAARQAAQTVPLVYRNTPL 149
R P + EP + V A+ T S+ + P+D A E Q +TVP Y +T L
Sbjct: 218 RIPGQPEPSI-ENVKAITTRGGTSSNSRETPSDAAAEEEIQPEKTVPQHYCDTRL 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,601,985
Number of Sequences: 37544
Number of extensions: 496137
Number of successful extensions: 1398
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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