Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0485
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)                 30   2.5  
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)                 30   2.5  
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)                     29   4.4  
SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)                 29   5.8  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               28   7.6  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)                   28   7.6  

>SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)
          Length = 1242

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 426  QEPFFRAGVEPPTRYPRLRMFSRPYPLND 340
            Q P  +A V PP RYP+ R+ SRP+ L+D
Sbjct: 1210 QVPPTQADVTPPRRYPQ-RVRSRPHKLDD 1237


>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
          Length = 1271

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 426  QEPFFRAGVEPPTRYPRLRMFSRPYPLND 340
            Q P  +A V PP RYP+ R+ SRP+ L+D
Sbjct: 1239 QVPPTQADVTPPRRYPQ-RVRSRPHKLDD 1266


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = -1

Query: 412 SGRGRTSYEVPAPTDVFKALPTKRLSCTLRPNVRSPPRSEPG*GKGVTAVNTT-TRRRSS 236
           SGRGR      +P+++ +A    RL     P +R+P +     GK   A NTT TR   S
Sbjct: 330 SGRGRALLVDCSPSNLIEA---NRLR-NHEPAMRNPLQIN---GKPPWAPNTTNTRGSQS 382

Query: 235 PQGRPADGAFEAARQAAQTVPLVYRNTPLDQNQPAGSGR 119
              R    A   A+Q  +T+   +RN  +D    + +GR
Sbjct: 383 SDSRKRTPARGGAQQKRKTLSRDHRNNSVDDIFLSATGR 421


>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
          Length = 604

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = -2

Query: 411 RAGVEPPTRYPRLRMFSRPYPLNDSPALFAQTSDPLRGQNPDEVRGLPRLTLQPDGAAHP 232
           RA    P R P LR  +  +     P L         G N      LPR   + D +  P
Sbjct: 99  RAVAATPPRQPSLRRHAPRHVTLTCPLLLGHDPKDKSGNNDALDEILPRSATRKDQSVPP 158

Query: 231 KDARPTEP 208
           KD+   +P
Sbjct: 159 KDSTTADP 166


>SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
          Length = 1380

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 273 LPRLTLQPDGAAHPKDARPTEPSRRHVKPPRRCRWC 166
           + R+ L+  G   P+ A+ +E   +  +PP RC +C
Sbjct: 169 IERVGLRAPGKTEPQYAQRSETKSQRRQPPDRCEYC 204


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -1

Query: 421  TLFSGRGRTSYEVPAPTDVFKALPTKRLSCTLRPNVRSPPRSE---PG*GKGVTAVNTTT 251
            TLF+  G+TS E  + +D    L +      + P  +S P+ +   P      +      
Sbjct: 1080 TLFASMGKTSKEAQSLSDSDDELGSLLEKQKVSPKKKSSPKKKGKAPSSKSADSDEAQPG 1139

Query: 250  RRRSSPQGRPADGAFEAAR 194
            +++++P+ RPA G   A+R
Sbjct: 1140 KKKAAPRKRPAKGVTAASR 1158


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = -2

Query: 402 VEPP-TRYPRLRMFSRPYPLNDSPALFAQTSDPLRGQNPD-EVRGLPRLTLQPDGAAHPK 229
           V PP   +PR      P+P    P        P    +P     G P   + P GA HP+
Sbjct: 431 VPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPR 490

Query: 228 DARPTEPSRRHVKPP 184
              P  P +R V PP
Sbjct: 491 VPPPGAPHQR-VPPP 504



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -2

Query: 402 VEPP-TRYPRLRMFSRPYPLNDSPALFAQTSDPLRGQNPD-EVRGLPRLTLQPDGAAHPK 229
           V PP   +PR+     P+P    P        P    +P     G P   + P GA+HP+
Sbjct: 501 VPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPR 560

Query: 228 DARPTEPSRRHVKPP 184
              P  P  R V PP
Sbjct: 561 VPPPGAPHPR-VPPP 574


>SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)
          Length = 226

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -2

Query: 348 LNDSPALFAQTSDPLRGQNPDEVRGLPRLTLQ--PDGAAHPKDARPTEPSRRHVKPPRR 178
           ++ SPAL + T +      P        L+L   P     PK++ P  P R HV+P  R
Sbjct: 106 VHSSPALESDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVPKESTPALPYREHVRPQDR 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,253,726
Number of Sequences: 59808
Number of extensions: 520887
Number of successful extensions: 1383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)