Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0485
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.14
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.14
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.14
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 30 2.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 3.9
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 28 6.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.14
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Frame = -1
Query: 382 PAPTDVFKALPTKRLSCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPADGAFE 203
P P K +R T P SPP P G + ++ R P+G P G
Sbjct: 329 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRG 388
Query: 202 AARQAAQ------TVPLVYRNTPLDQNQPAGS------GRITPPTGC--SFVSPRQRARV 65
R++++ P R +P + P GS R +PPTG + + RQ+ +
Sbjct: 389 GPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQA 448
Query: 64 LVARHAASTPSGRPVT 17
R S P+G P T
Sbjct: 449 PEDRPTGSPPTGSPPT 464
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.14
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Frame = -1
Query: 382 PAPTDVFKALPTKRLSCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPADGAFE 203
P P K +R T P SPP P G + ++ R P+G P G
Sbjct: 350 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRG 409
Query: 202 AARQAAQ------TVPLVYRNTPLDQNQPAGS------GRITPPTGC--SFVSPRQRARV 65
R++++ P R +P + P GS R +PPTG + + RQ+ +
Sbjct: 410 GPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQA 469
Query: 64 LVARHAASTPSGRPVT 17
R S P+G P T
Sbjct: 470 PEDRPTGSPPTGSPPT 485
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.14
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Frame = -1
Query: 382 PAPTDVFKALPTKRLSCTLRPNVRSPPRSEPG*GKGVTAVNTTTRRRSSPQGRPADGAFE 203
P P K +R T P SPP P G + ++ R P+G P G
Sbjct: 335 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRG 394
Query: 202 AARQAAQ------TVPLVYRNTPLDQNQPAGS------GRITPPTGC--SFVSPRQRARV 65
R++++ P R +P + P GS R +PPTG + + RQ+ +
Sbjct: 395 GPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQA 454
Query: 64 LVARHAASTPSGRPVT 17
R S P+G P T
Sbjct: 455 PEDRPTGSPPTGSPPT 470
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
protein T20F7.5 protein.
Length = 1065
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -2
Query: 360 RPYPLNDSPALFAQTSDPLRGQN----PDEVRGLPRLTLQPDGAAHPKDARPTEPSRRHV 193
R P +++ A F + +R + PD VRG L L+P G +P D RRH+
Sbjct: 687 RILPAHENFAAFRRRMQEMRNNDDVGDPDHVRGSGPLILEPRGYWYPTDDEMELLERRHL 746
Query: 192 K 190
+
Sbjct: 747 E 747
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Frame = -1
Query: 241 SSPQGRPADGAFEAARQAAQTVPLVYRNTPLDQ-----NQPAGSGRITPPTGCSFVSPRQ 77
SSPQ + +++ +A TV + +P + PAGS +T SF SP+
Sbjct: 920 SSPQSPTSAQPAQSSSTSAATVTVSSSQSPTSSPAQQSSTPAGSSTVTVQQSSSFQSPQS 979
Query: 76 RARV-----LVARHAASTPSGRPVT 17
++ + + A S+ SG P T
Sbjct: 980 TTQIGSSTTVPSTQAPSSTSGGPTT 1004
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = -3
Query: 773 KSITQTSEIRSTYRNKFKLKIWESK*RYDESLEHSSNLRNSNHEIF*IMKIFSESLKLAL 594
K + QTS+I ST + FK+ + E S R++ H + M+ ++ + K+ L
Sbjct: 115 KEMAQTSQIESTSQRSFKVVV---------LCEADSLTRDAQHGLRRTMEKYANNCKIVL 165
Query: 593 AI*TFSRLLRINKKRTYYLN 534
+ + SR++ + R +N
Sbjct: 166 SCESLSRIIEPLQSRCIIIN 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,385
Number of Sequences: 27780
Number of extensions: 406502
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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