Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0485
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45207.2 68414.m05186 remorin family protein Since this genom...    31   1.2  
At3g59500.1 68416.m06640 integral membrane HRF1 family protein c...    28   6.2  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    28   6.2  
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain...    28   8.3  
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain...    28   8.3  
At1g75160.1 68414.m08730 expressed protein contains Pfam profile...    28   8.3  
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam...    28   8.3  
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac...    28   8.3  
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac...    28   8.3  

>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = -1

Query: 307 PPRSEPG*GKGVTAVNTTTRRRSSPQGRPADGAFEAARQAAQTVPLVYRNTPLDQNQPAG 128
           P R +P   + V+    +    SS Q    D   E+ + AA     V R     Q  P G
Sbjct: 321 PQRIDPSMARSVSIHGCSETLASSSQ----DDIHESMKDAATDAQAVSRRDMATQMSPEG 376

Query: 127 SGRITPPTGCSF 92
           S R +P   CSF
Sbjct: 377 SIRFSPERQCSF 388


>At3g59500.1 68416.m06640 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 422 NPFFGPGSNLLR-GTRAYG 369
           NPF GPGS L+R G  AYG
Sbjct: 25  NPFSGPGSGLIRSGLGAYG 43


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 419 PFFGPGSNLLRGTRAYGCFQGPTH*TTLLHSSPKRPIPSEV 297
           P FGP S+       +G  Q PTH T  L+ +   PIPS V
Sbjct: 47  PPFGPSSSEYSSFFPFGA-QQPTHDTPDLNQTQNTPIPSFV 86


>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = -1

Query: 235 PQGRPADGAFEAARQAAQTVPLVYRNTPLDQNQPAGSGRITPPTGCSFVSPRQRARVLVA 56
           P  RP         QAA  +  V  +T       + +GR+  PT     +P+     +V 
Sbjct: 762 PMSRPLSAPIIPPTQAAPVISAVQTSTASLARSMSSTGRLGSPTHSQAYNPQSYKHAIVG 821

Query: 55  RHAASTPSGR 26
               + PS +
Sbjct: 822 SSGFTHPSSQ 831


>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = -1

Query: 235 PQGRPADGAFEAARQAAQTVPLVYRNTPLDQNQPAGSGRITPPTGCSFVSPRQRARVLVA 56
           P  RP         QAA  +  V  +T       + +GR+  PT     +P+     +V 
Sbjct: 762 PMSRPLSAPIIPPTQAAPVISAVQTSTASLARSMSSTGRLGSPTHSQAYNPQSYKHAIVG 821

Query: 55  RHAASTPSGR 26
               + PS +
Sbjct: 822 SSGFTHPSSQ 831


>At1g75160.1 68414.m08730 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 395

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 216 TEPSRRHVKPPRRC-RWCTGI-PR*TRTSLLDRDALHRQPV 100
           T+PS+ H  PPR   R+  G+ PR T +  LD   +  QPV
Sbjct: 216 TQPSQAHRGPPRPLRRFFQGLDPRCTASLFLDAVCIGEQPV 256


>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 629

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -2

Query: 333 ALFAQTSDPLRGQNPDEVRGLPRLTLQPDGAAHPKDARPTEPSRRHVKPPRRCRWCTG 160
           A + QTS P    N  E+  L    LQP      ++     PSR ++     C+ C G
Sbjct: 275 ATYGQTSSPFGNNNHAEIAKLIHKVLQPRA---KQNLLWNPPSREYMSKAMTCQICQG 329


>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 315 SDPLRGQNPDEVRGLPRLTLQPDGAAHPKDARPTEPSRRHVKPPRRCRWCT 163
           S P++  NP E    P+ ++QP  +    DA  +E     VK   R R  T
Sbjct: 456 SAPMQVDNPVENDNPPQNSVQPSSSEQASDANESESRNGKVKESGRSRAIT 506


>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 315 SDPLRGQNPDEVRGLPRLTLQPDGAAHPKDARPTEPSRRHVKPPRRCRWCT 163
           S P++  NP E    P+ ++QP  +    DA  +E     VK   R R  T
Sbjct: 456 SAPMQVDNPVENDNPPQNSVQPSSSEQASDANESESRNGKVKESGRSRAIT 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,503
Number of Sequences: 28952
Number of extensions: 368815
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)