Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0484
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    28   1.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.7  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.7  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -2

Query: 700 WSTESAVRTTTTHSDL*WSQKCAYSSADRSVYKFITFYNTNRTIFMKKKMEFSLPKTIL 524
           W  E A +      D+    KC Y + D   Y F+   N   TI   K  E  L   IL
Sbjct: 195 WDLEMAEKEYCRRIDI---LKCHYETIDEKDYSFVKMINFAETIIANKSNEGYLLSRIL 250


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 724 TECSLILRWSTESAVRTTTTHSDL*WSQKCAYSSADRSVYKFITFYNTNRTIFMKKKMEF 545
           T  S +LRWS     RTT     L       Y + D  +   +  Y T+ ++  K+K+ +
Sbjct: 428 TTDSYLLRWSR----RTTNEEVRLDEGDDTLYGTNDAEMDDMLDIYETDESVGSKRKIAY 483


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 173 ACRHYSLENEARGSSLSYSIVIMSTFMTHIGLPESPLTNLF*KNE 39
           A R Y  +     S+ S  +++++  + H+ +P   LTN    NE
Sbjct: 419 ASRQYENDGACLYSAASLEMIVITEHILHLKMPYMSLTNTLRINE 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,563
Number of Sequences: 5004
Number of extensions: 55092
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)