Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0484
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787...    29   3.9  

>09_02_0363 -
           7871730-7871853,7871986-7872075,7872720-7872799,
           7872881-7872964,7874944-7874992,7875114-7875240,
           7875798-7875934,7876004-7876050,7876126-7876185,
           7876810-7876862,7878205-7878269,7879050-7879174,
           7879307-7879366,7879670-7879806,7880737-7880805,
           7880889-7881045,7881121-7881235,7881855-7881916
          Length = 546

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   VGLTSSRRIAPSFFQNKFVSGDSGSPICVMKVD 105
           V ++S+  + PSF + KF+  DS    C  KVD
Sbjct: 166 VEMSSTVEMTPSFLEPKFLEDDSCLTFCSQKVD 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,653
Number of Sequences: 37544
Number of extensions: 288708
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)