Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0484
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_26117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_12667| Best HMM Match : Caudal_act (HMM E-Value=6.7)                28   7.0  

>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 527 YGFRQTKFHFFFHKNCSVCVIKSYKFIHGSVCR*ISAFLTPL*VRMGCGCAHC 685
           YG+  TK+H   H +  VCV    +F+ G+      A L P  V   CG   C
Sbjct: 106 YGYLMTKYHGHKHSSQFVCVDHDAEFVPGTSVNREGALLYP--VEGRCGSLPC 156


>SB_26117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 527 YGFRQTKFHFFFHKNCSVCVIKSYKFIHGSVCR*ISAFLTPL*VRMGCGCAHC 685
           YG+  T++H   H +  VCV    +++ G+      A L P  V   CG   C
Sbjct: 86  YGYLMTEYHNHKHSSQFVCVDHDAEYVPGTSVNREGALLYP--VEGKCGSLPC 136


>SB_12667| Best HMM Match : Caudal_act (HMM E-Value=6.7)
          Length = 198

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 527 YGFRQTKFHFFFHKNCSVCVIKSYKFIHGSVCR*ISAFLTPL*VRMGCGCAHC 685
           YG+  T++H   H +  VCV    +++ G+      A L P  V   CG   C
Sbjct: 132 YGYLMTEYHNHKHSSQFVCVDHDAEYVPGTSVNREGALLYP--VEGKCGSLPC 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,826
Number of Sequences: 59808
Number of extensions: 390058
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)