Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0484
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78200-1|CAB01579.1|  377|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    29   4.6  

>Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical
           protein ZK1098.2 protein.
          Length = 650

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 330 KFHNFV-KITPKHTRKRSENISLKILQLHFLQEIIN 226
           KF NF+ KIT +  RKR+ N+    LQ   LQ +IN
Sbjct: 316 KFDNFIRKITCESDRKRNRNLWNDFLQTPALQSLIN 351


>Z78200-1|CAB01579.1|  377|Caenorhabditis elegans Hypothetical
           protein T04H1.1 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 307 YFNEVMKFTFQMTVF---LTNWIYISITMTKI*LSDNIS 414
           YFN+V+KFT + T F   +TN+  I   +    +SD ++
Sbjct: 193 YFNQVLKFTIEQTGFIISITNFAQIPFKLLAAYISDKVT 231


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 616 RSVYKFITFYNT--NRTIFMKKKMEFSL-PKTILKHNKNNIKCS 494
           R ++ + +F  T  NRT   +++   +  PK I K++KNNI  S
Sbjct: 615 RKIFPYFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLS 658


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 616 RSVYKFITFYNT--NRTIFMKKKMEFSL-PKTILKHNKNNIKCS 494
           R ++ + +F  T  NRT   +++   +  PK I K++KNNI  S
Sbjct: 615 RKIFPYFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLS 658


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 616 RSVYKFITFYNT--NRTIFMKKKMEFSL-PKTILKHNKNNIKCS 494
           R ++ + +F  T  NRT   +++   +  PK I K++KNNI  S
Sbjct: 661 RKIFPYFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLS 704


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,984
Number of Sequences: 27780
Number of extensions: 309005
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)