Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0484
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.57 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 589 YNTNRTIFMKKKMEFSLPKTILKHNKNNIK 500
           Y TNR++F++++ E    + +L+H K   +
Sbjct: 131 YPTNRSLFIREQTEEMYREMLLEHKKRRAR 160


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 307 NTKTYQKTKREHFT*NPTIAFF 242
           N K Y K +   F   PTI +F
Sbjct: 13  NPKLYDKHRAPKFLGQPTIVYF 34


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 739 LSKCSTECSLILRWSTESAVRTTT 668
           L +C+T      RW   S + TTT
Sbjct: 768 LLQCATSNYSTTRWPATSVITTTT 791


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,407
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)