Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0484
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42490.1 68416.m04406 hypothetical protein                          28   5.7  
At1g44860.1 68414.m05139 hypothetical protein includes At2g10370...    27   10.0 

>At3g42490.1 68416.m04406 hypothetical protein
          Length = 267

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 273 CSRFVFWYVLVLF*RSYEIYFSNDRFSDKLDLHFN 377
           C+R + W   + + R Y  +   D F+DKL  H N
Sbjct: 180 CARSIPWEFYIQYKRRYYKFSEVDLFADKLMFHIN 214


>At1g44860.1 68414.m05139 hypothetical protein includes At2g10370,
           At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
           At3g43040, At3g42500
          Length = 244

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 583 TNRTIFMKKKMEFSLPKTILKHNKNNIKC--SN*IYINKLK*SGRYCENNIRIVLTF 419
           TN     K    F LP  I+  NK+ ++C  +  I ++  K    +C+NN+ I L +
Sbjct: 147 TNTASNGKDTAGFKLPFMIMDKNKDTLECEANGQIAVDLEKRFRAFCKNNVVIALAW 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,825
Number of Sequences: 28952
Number of extensions: 261842
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)