Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0483
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.20 
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   30   1.8  
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   3.2  
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   29   5.6  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   7.5  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    28   7.5  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   7.5  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.9  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   9.9  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.9  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 69  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 218
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +2

Query: 65  HPHHRAYLRVRQ*ILQKLGLSYQKRQAQEAPSRT*TRGEAMGSSRQLHGCRRSLFRTGQK 244
           H + R+Y    +   ++LG S   +  +   ++     ++  +S  + GC  SL   GQ 
Sbjct: 19  HRNTRSYRTKSRFSAKRLGKSRNIKNRKSVRTKL---QDSRNNSTAIFGCNMSLLNKGQS 75

Query: 245 PKT---YPF*RNS-QC-ETRY 292
           PK+   +PF R++ QC E+RY
Sbjct: 76  PKSRRVHPFARHAGQCAESRY 96


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 240 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 97
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 498 EVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 677
           E I +    ++  NN   +   +  GG    +  +E   S E+  N V WEN    + YI
Sbjct: 101 ETINVTGNYWLPSNNVLELKYLRDIGGVTWTDNCAECCLSKETSQNSVTWENLRSEMYYI 160

Query: 678 GTD 686
           G +
Sbjct: 161 GIE 163


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 403 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 501
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 412 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 498
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 249 KLTLF-KEIRSVKPDTM--KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANL 419
           KL +F K+     PD +  ++++  S ++  RE W   +    PI     + + +   +L
Sbjct: 96  KLQIFVKQKLEGVPDKIMGRVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSL 153

Query: 420 KPTRPNRCYKFLA 458
            PTRPNR  K +A
Sbjct: 154 LPTRPNRTSKPIA 166


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 324 EFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 431
           E  RET  R  E+ FP++   E+    L+  LK T+
Sbjct: 170 ESCRETGKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 689 RVCADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAA 573
           R   D + GF+E L Y    KRLE  G L    H+W ++
Sbjct: 326 RSLTDHSKGFIEKLLYKIPSKRLEVAGAL---THEWLSS 361


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 206
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/78 (20%), Positives = 41/78 (52%)
 Frame = +3

Query: 129 IKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIV 308
           +K+ K++   ++ E ++ + +L    + A++      K ++L   KE+ +++ +   L  
Sbjct: 436 LKDLKKEHDALQSESKKDKAELAKLDIAAQEGLAAMEKVEELN--KEVIALREENKTLSD 493

Query: 309 NWSGKEFLRETWTRFVED 362
           N++ +  LR+ +   VED
Sbjct: 494 NFNSERILRKKYYNMVED 511


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 96  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 206
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,999,419
Number of Sequences: 59808
Number of extensions: 565614
Number of successful extensions: 1845
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)