Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0482
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   2.3  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   4.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.3  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 159 IRTYSSTKWRRFTRFCSQMILFNFSLFHENMIKIYL-FSILIR 284
           ++ YSST+        S+++L+ F+ F EN++K+ +  SI +R
Sbjct: 422 VQLYSSTESDLLKEGLSRILLYFFTYFPENILKLKIDTSIFLR 464


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 627 QNYFYQYDGQIL-MNSHYHSYVMFCYHHYDVNPLHQIF 517
           Q+Y Y+ D QI+ + + YH Y+M   HH    P    F
Sbjct: 848 QSYHYE-DCQIMDVRNDYHLYIMTWLHHSWTLPYRDYF 884


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 609 YDGQILMNSHYHSYVMFCYHH 547
           YD QI++NS Y+ +V    +H
Sbjct: 826 YDNQIILNSTYNEFVEVLRNH 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,241
Number of Sequences: 5004
Number of extensions: 38064
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)